Hg_chrom8_TN10mRNA_14983
Organism: Heterodera glycines Gene Locus: chr8:152023-158177 Feature type: polypeptideProtein Sequence
Length: 300
(Signal peptide: 1-41)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 1.705 | 0.545 | 1.379 | 0.556 | 1.197 | 1.151 | 1.5 | 0.519 | 0.631 | 0.303 | 3.333 | 0.37 | 0.897 | 1.088 | 1.095 | 0.874 | 0.808 | 2.308 | 2.843 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14139
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRRS
|
— | — | — | — |
1-41
|
— |
0.952
|
— |
0.000
|
0.100
|
0.097
|
0.064
|
0.104
|
0.141
|
0.072
|
0.087
|
0.013
|
0.088
|
0.966
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002459
|
2.000
|
2.000
|
Hsc_gene_6829.t2;Hsc_gene_6829.t3
|
Hsc_gene_6829.t1;Hsc_gene_6829.t2;Hsc_gene_6829.t3
|
— |
Q09566.1 Protein lon-1 [Caenorhabditis elegans]
|
KAI1699495.1 cysteine-rich secretory protein family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576
|
GO:0008150_0.793|GO:0005575_0.755|GO:0110165_0.743|GO:0016020_0.531
|
IPR001283+120-254_141-159_207-223_241-254+|IPR014044+116-254_124-246+|IPR018244+208-218+|IPR035940+103-252_113-297+
|
SM00198+116-254+
|
PF00188+124-246+Cysteine-rich_secretory_protein_family
|
— |
PTHR10334+120-254+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-300
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.913
|
33919.040
|
7.905
|
7.500
|
16.667
|
17.000
|
41.667
|
58.333
|
10.333
|
6.333
|
55.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
674.818
|
10.424
|
4.374
|
4447.427
|
1476.225
|
242.188
|
108.652
|
34.887
|
8.275
|
574.557
|
331.865
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.475
|
8.602
|
10.097
|
-1.624
|
-2.591
|
-1.149
|
-2.912
|
1.784
|
-6.227
|
9.278
|
— | — | — |