Hg_chrom8_TN10mRNA_14987
Organism: Heterodera glycines Gene Locus: chr8:165434-194509 Feature type: polypeptideProtein Sequence
Length: 2,141
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.918 | 1.119 | 0.934 | 0.177 | 1.643 | 1.162 | 0.562 | 0.887 | 1.204 | 1.067 | 1.706 | 2.006 | 1.129 | 0.71 | 0.953 | 0.607 | 0.926 | 0.962 | 1.078 | 0.797 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14142
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cytoplasm
|
nucleus
|
RKSK,PKKAK,KKNKKLAENFQKRRAD,KKDFAAIYRNSRKVKT,KKPTEEELRREKKGKA,KKLSAGGEKKTEKKMLRK,KKLEKVHQTMEEEQKELRK,KRRNVFRPINMVKEIIKKR,RRNVFRPINMVKEIIKKRN,KRHGYNDKAEQQEFRRKER,KKMKNPGKKPTEEELRREK,KKMLRKDSSGSGSSRRQER,RKAKKKLMEEIEKKMKKKQPEKVS
|
— | — | — | — |
1-28
|
0.920
|
1.000
|
2.000
|
2.000
|
0.235
|
0.528
|
0.063
|
0.483
|
0.391
|
0.183
|
0.198
|
0.048
|
0.360
|
0.319
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001410
|
2.000
|
3.000
|
Hsc_gene_6826.t1;Hsc_gene_6826.t2;Hsc_gene_6826.t3
|
— | — | — |
CAD2188906.1 unnamed protein product [Meloidogyne enterolobii]
|
WP_331571824
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.961|GO:0005575_0.948|GO:0110165_0.945|GO:0009987_0.927|GO:0016020_0.907|GO:0005622_0.871|GO:0071944_0.863|GO:0005886_0.857|GO:0005737_0.820|GO:0071840_0.798|GO:0016043_0.794|GO:0032501_0.776|GO:0032502_0.765|GO:0048856_0.759|GO:0007275_0.728|GO:0030154_0.728|GO:0048468_0.728|GO:0048869_0.728|GO:0048731_0.723|GO:0007399_0.721|GO:0030030_0.717|GO:0120036_0.717|GO:0022008_0.712|GO:0030182_0.702|GO:0048666_0.702|GO:0048699_0.702|GO:0009653_0.696|GO:0031175_0.693|GO:0000902_0.687|GO:0048812_0.682|GO:0048858_0.682|GO:0120039_0.682|GO:0048667_0.681|GO:0007409_0.679|GO:0061564_0.679|GO:0019827_0.670|GO:0030718_0.670|GO:0036099_0.670|GO:0098727_0.670
|
IPR033468+1408-1447+|IPR036282+1333-1449+|IPR050931+1390-1536+
|
— |
PF17171+1408-1447+Glutathione_S-transferase,_C-terminal_domain
|
— |
PTHR12289+1390-1536+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
98-148;242-322;389-461;812-858;1357-1410;1518-1645;2130-2141
|
7.000
|
1-97;149-241;323-388;462-811;859-1356;1411-1517;1646-2129
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.591
|
245726.200
|
9.111
|
39.000
|
32.695
|
9.949
|
51.938
|
48.062
|
17.702
|
14.993
|
43.017
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
42777.483
|
111.778
|
13543.259
|
2785.637
|
658.177
|
139.997
|
126.041
|
266.704
|
223284.156
|
13076.524
|
103165.509
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.691
|
4.501
|
-2.174
|
-2.113
|
-2.219
|
— | — |
-0.948
|
3.986
|
-6.151
|
-3.948
|
— | — |