Hg_chrom8_TN10mRNA_14990
Organism: Heterodera glycines Gene Locus: chr8:212410-222372 Feature type: polypeptideProtein Sequence
Length: 726
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.993 | 1.185 | 0.726 | 2.042 | 0.895 | 1.342 | 0.82 | 2.755 | 1.133 | 0.838 | 1.085 | 0.972 | 0.65 | 0.821 | 0.871 | 1.279 | 0.835 | 0.73 | 0.636 | 0.81 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14145
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.645
|
0.147
|
0.031
|
0.501
|
0.116
|
0.110
|
0.127
|
0.025
|
0.190
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011754
|
1.000
|
1.000
|
Hsc_gene_6818.t5
|
Hsc_gene_6818.t1;Hsc_gene_6818.t2;Hsc_gene_6818.t3;Hsc_gene_6818.t4;Hsc_gene_6818.t5
|
— | — |
KAF7623501.1 CRC domain-containing protein [Meloidogyne graminicola]
|
No
|
0.380
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270|GO:0016814
|
— |
IPR005172+277-376+|IPR013158+382-568+|IPR033467+333-377+
|
SM01114+333-377+
|
PF08210+382-568+APOBEC-like_N-terminal_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-199
|
1.000
|
200-726
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
79786.270
|
8.209
|
35.000
|
26.309
|
11.433
|
50.689
|
49.311
|
16.942
|
9.366
|
53.581
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
527.353
|
1930.074
|
1155.083
|
283.524
|
103.703
|
85.905
|
198.336
|
370.961
|
231.683
|
585.564
|
433.900
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.970
|
-2.904
|
-1.918
|
-1.481
|
— |
1.219
|
2.010
|
-0.760
|
— | — | — | — | — |
No JSON data available for plots.