Hg_chrom8_TN10mRNA_14991
Organism: Heterodera glycines Gene Locus: chr8:230806-234776 Feature type: polypeptideProtein Sequence
Length: 376
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.206 | 0.928 | 0.484 | 0.642 | 0.621 | 0.887 | 0.823 | 0.931 | 0.887 | 1.186 | 0.524 | 2.66 | 1.551 | 0.767 | 1.357 | 1.254 | 1.308 | 1.169 | 1.227 | 0.626 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14146
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.122
|
0.920
|
0.045
|
0.114
|
0.103
|
0.258
|
0.171
|
0.337
|
0.130
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011755
|
1.000
|
1.000
|
Hsc_gene_6814.t1
|
Hsc_gene_6814.t1;Hsc_gene_6815.t1
|
— |
Q0VCH6.1 Probable mitochondrial glutathione transporter SLC25A40 [Bos taurus]
|
KAI1712501.1 mitochondrial carrier protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990542
|
GO:0008150_0.775|GO:0005575_0.739|GO:0110165_0.737|GO:0016020_0.665|GO:0009987_0.629|GO:0005622_0.619|GO:0005737_0.598|GO:0043226_0.571|GO:0043229_0.561|GO:0003674_0.556|GO:0043227_0.546|GO:0043231_0.538
|
IPR018108+26-62_26-153_107-150_170-254_172-256_263-370_264-366+|IPR023395+24-372_26-363+|IPR045315+16-371+
|
— |
PF00153+26-62_107-150_172-256_263-370+Mitochondrial_carrier_protein
|
— |
PTHR45760+16-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-17
|
1.000
|
18-376
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
41275.760
|
10.091
|
17.500
|
18.351
|
11.170
|
42.553
|
57.447
|
11.968
|
6.383
|
54.255
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
510.900
|
341.108
|
233.943
|
476.800
|
568.465
|
365.775
|
887.326
|
135.490
|
44.243
|
1073.666
|
632.484
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.773
|
0.346
|
1.136
|
0.222
|
-0.621
|
1.287
|
-1.533
|
2.850
|
-4.718
|
— | — | — | — |
No JSON data available for plots.