Hg_chrom8_TN10mRNA_14992
Organism: Heterodera glycines Gene Locus: chr8:235106-240039 Feature type: polypeptideProtein Sequence
Length: 413
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.845 | 0.845 | 0.44 | 0.501 | 0.726 | 1.118 | 0.922 | 2.058 | 0.807 | 1.407 | 0.514 | 1.424 | 1.614 | 0.605 | 1.433 | 1.349 | 1.35 | 1.064 | 1.676 | 0.57 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14147
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.130
|
0.880
|
0.078
|
0.129
|
0.275
|
0.187
|
0.165
|
0.192
|
0.140
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004682
|
1.000
|
2.000
|
Hsc_gene_6812.t1;Hsc_gene_6812.t2
|
Hsc_gene_6812.t1;Hsc_gene_6812.t2
|
— |
Q6DG32.1 Solute carrier family 25 member 36-A [Danio rerio]
|
KAI3407796.1 hypothetical protein GPALN_014134 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015218
|
GO:0005575_0.865|GO:0110165_0.856|GO:0008150_0.851|GO:0016020_0.791|GO:0009987_0.780|GO:0005622_0.756|GO:0043226_0.721|GO:0005737_0.719|GO:0043229_0.701|GO:0043227_0.681|GO:0043231_0.679|GO:0003674_0.668|GO:0051179_0.636|GO:0006810_0.631|GO:0051234_0.631|GO:0055085_0.515|GO:0005739_0.502
|
IPR018108+61-196_62-192_203-285_205-288_302-382_302-385+|IPR023395+62-382_101-387+|IPR049562+62-387+
|
— |
PF00153+61-196_205-288_302-382+Mitochondrial_carrier_protein
|
— |
PTHR45829+62-387+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
404-413
|
1.000
|
1-403
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
46102.740
|
10.267
|
23.500
|
21.308
|
14.044
|
46.973
|
53.027
|
14.528
|
6.780
|
50.363
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1208.753
|
422.295
|
351.903
|
265.159
|
230.265
|
203.676
|
299.656
|
154.960
|
240.887
|
4384.661
|
2608.758
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.493
|
-0.809
|
-0.299
|
-0.236
|
— |
0.568
|
-0.505
|
1.096
|
— | — | — | — | — |
No JSON data available for plots.