Hg_chrom8_TN10mRNA_14997
Organism: Heterodera glycines Gene Locus: chr8:304965-314116 Feature type: polypeptideProtein Sequence
Length: 950
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.82 | 1.714 | 1.053 | 0.508 | 1.386 | 1.35 | 0.564 | 0.789 | 1.567 | 0.953 | 1.467 | 2.415 | 1.287 | 0.972 | 0.687 | 0.857 | 0.759 | 0.574 | 0.648 | 0.65 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14152
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-Not_Clustered
|
0.920
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
LGEV,GKMKGSKSAKKKH,KKNPKKLPLAPKKKVP,KRPRMGLANDEKGKGK,KKKHPLNNCGANNDAKRPR,KKHPLNNCGANNDAKRPRM,RKVEEIAKENFATLLRKQK
|
— | — | — | — | — |
0.890
|
0.094
|
0.000
|
— |
0.881
|
0.067
|
0.008
|
0.392
|
0.038
|
0.013
|
0.016
|
0.006
|
0.112
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011757
|
1.000
|
1.000
|
Hsc_gene_6798.t1
|
— | — |
Q4PBL3.1 Histone-lysine N-methyltransferase, H3 lysine-36 specific [Ustilago maydis 521]
|
XP_055328095.1 histone-lysine N-methyltransferase EHMT1-like [Paramacrobiotus metropolitanus]
|
KAK6873398
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.933|GO:0009987_0.891|GO:0003674_0.862|GO:0005575_0.859|GO:0110165_0.859|GO:0005622_0.788|GO:0071840_0.777|GO:0016043_0.770|GO:0016020_0.719|GO:0043226_0.719|GO:0003824_0.711|GO:0043229_0.698|GO:0140096_0.685|GO:0016740_0.683|GO:0065007_0.674|GO:0006325_0.654|GO:0006338_0.653|GO:0008168_0.650|GO:0008276_0.650|GO:0016741_0.650|GO:0050789_0.650|GO:0008152_0.636|GO:0050794_0.636|GO:0043170_0.635|GO:0140993_0.627|GO:0042054_0.623|GO:0140938_0.623|GO:0008170_0.619|GO:0008757_0.619|GO:0016278_0.619|GO:0016279_0.619|GO:0043227_0.613|GO:0043231_0.603|GO:0005488_0.599|GO:0044237_0.594|GO:0009058_0.593|GO:0044249_0.585|GO:0009059_0.578|GO:0010467_0.564|GO:0044238_0.547|GO:0019222_0.541|GO:0031323_0.538|GO:0060255_0.536|GO:0009889_0.525|GO:0031326_0.523|GO:0010556_0.519|GO:0010468_0.517|GO:0050896_0.514|GO:0006139_0.506
|
IPR001214+186-309_186-315_199-309+|IPR046341+81-334_124-330+|IPR051357+102-334+
|
SM00317+186-315+
|
PF00856+199-309+SET_domain
|
— |
PTHR45660+102-334+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
339-615
|
2.000
|
1-338;616-950
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
107877.010
|
6.276
|
-2.500
|
28.737
|
9.263
|
52.000
|
48.000
|
14.632
|
14.105
|
45.895
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
2091.412
|
12.253
|
384.642
|
593.838
|
128.292
|
18.575
|
8.827
|
32.893
|
6624.789
|
3739.089
|
4975.818
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.744
|
5.463
|
0.735
|
-2.241
|
-2.774
|
-1.065
|
— |
-1.759
|
— |
-3.310
|
-4.497
|
— | — |