Hg_chrom8_TN10mRNA_14998
Organism: Heterodera glycines Gene Locus: chr8:316383-323863 Feature type: polypeptideProtein Sequence
Length: 1,081
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.602 | 2.108 | 1.06 | 0.542 | 1.233 | 1.637 | 0.595 | 0.833 | 1.665 | 1.013 | 1.402 | 1.469 | 1.208 | 0.801 | 0.717 | 1.031 | 0.652 | 0.701 | 0.925 | 0.626 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14153
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KRQK,KKRMSTNEIGKKNRA,KRPRIGGPTNDEKGKGK,AGAKMKHQLKIGAKNDAKRPRIGG
|
— | — | — | — | — |
0.717
|
0.123
|
0.000
|
— |
0.831
|
0.062
|
0.013
|
0.419
|
0.056
|
0.036
|
0.045
|
0.021
|
0.112
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011758
|
1.000
|
1.000
|
Hsc_gene_6797.t1
|
— | — |
Q9M1X9.1 Putative histone-lysine N-methyltransferase ASHH4 [Arabidopsis thaliana]
|
KAH7696095.1 histone-lysine N-methyltransferaseH3 lysine-9 specific 3-like [Aphelenchus avenae]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.923|GO:0005575_0.910|GO:0110165_0.904|GO:0009987_0.884|GO:0003674_0.877|GO:0005622_0.853|GO:0016020_0.847|GO:0043226_0.819|GO:0043229_0.799|GO:0065007_0.789|GO:0071840_0.779|GO:0016043_0.776|GO:0050789_0.769|GO:0043227_0.758|GO:0008152_0.747|GO:0043170_0.747|GO:0050794_0.747|GO:0043231_0.738|GO:0044237_0.677|GO:0009058_0.676|GO:0003824_0.673|GO:0044249_0.669|GO:0009059_0.666|GO:0140096_0.661|GO:0019222_0.659|GO:0010467_0.657|GO:0044238_0.657|GO:0031323_0.649|GO:0060255_0.647|GO:0016740_0.645|GO:0009889_0.635|GO:0031326_0.635|GO:0010556_0.630|GO:0010468_0.627|GO:0008168_0.617|GO:0008276_0.617|GO:0016741_0.617|GO:0005488_0.616|GO:0006325_0.611|GO:0006338_0.611|GO:0006139_0.610|GO:0005634_0.607|GO:0090304_0.591|GO:0140993_0.578|GO:0042054_0.571|GO:0140938_0.571|GO:0008170_0.566|GO:0008757_0.566|GO:0016278_0.566|GO:0016279_0.566|GO:0034654_0.553|GO:0141187_0.538|GO:0016070_0.536|GO:0032774_0.530|GO:0006351_0.510
|
IPR001214+305-427_305-433_317-427+|IPR046341+199-456_237-448+|IPR051357+225-451+
|
SM00317+305-433+
|
PF00856+317-427+SET_domain
|
— |
PTHR45660+225-451+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-200;507-721
|
2.000
|
201-506;722-1081
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
123088.320
|
6.868
|
4.000
|
27.660
|
9.343
|
54.302
|
45.698
|
14.431
|
13.228
|
46.623
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1624.965
|
2.776
|
275.130
|
212.767
|
39.466
|
5.272
|
2.641
|
9.953
|
3190.675
|
4510.711
|
3944.982
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.413
|
6.133
|
-0.263
|
-2.465
|
-2.889
|
— | — |
-1.780
|
2.291
|
-3.731
|
-3.380
|
— | — |