Hg_chrom8_TN10mRNA_15003
Organism: Heterodera glycines Gene Locus: chr8:356605-359521 Feature type: polypeptideProtein Sequence
Length: 153
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 0.912 | 1.545 | 0.451 | 1.307 | 0.838 | 0.7 | 0.98 | 1.162 | 1.413 | 0.891 | 1.922 | 1.634 | 0.754 | 1.734 | 0.747 | 1.071 | 0.297 | 1.508 | 0.769 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14158
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKGSAHTMLDKKGRF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.484
|
0.281
|
0.004
|
0.640
|
0.068
|
0.236
|
0.160
|
0.015
|
0.129
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011760
|
1.000
|
1.000
|
Hsc_gene_6794.t1
|
Hsc_gene_6794.t1
|
— |
Q5DTY9.2 BTB/POZ domain-containing protein KCTD16 [Mus musculus]
|
KAF7635903.1 BTB_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0051260
|
GO:0005575_0.709|GO:0110165_0.696|GO:0008150_0.687|GO:0003674_0.642|GO:0009987_0.597|GO:0065007_0.576|GO:0050789_0.568|GO:0016020_0.554|GO:0005488_0.540|GO:0050794_0.514
|
IPR003131+5-101+|IPR011333+1-112_3-108+
|
— |
PF02214+5-101+BTB/POZ_domain
|
— |
PTHR14499+1-106+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
121-153
|
1.000
|
1-120
|
4crh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.560
|
17839.210
|
5.738
|
-1.500
|
32.680
|
12.418
|
51.634
|
48.366
|
16.340
|
16.340
|
43.137
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
631.049
|
120.534
|
179.049
|
101.322
|
45.649
|
31.852
|
92.522
|
93.543
|
130.406
|
2413.858
|
1435.236
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.342
|
-0.388
|
-0.713
|
-1.182
|
-0.505
|
1.550
|
1.452
|
— | — | — |
-2.658
|
— | — |
No JSON data available for plots.