Hg_chrom8_TN10mRNA_15011
Organism: Heterodera glycines Gene Locus: chr8:426121-430559 Feature type: polypeptideProtein Sequence
Length: 300
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 0.62 | 0.848 | 1.264 | 0.444 | 0.94 | 0.556 | 1.833 | 1.407 | 1.937 | 0.606 | 2.157 | 2.222 | 0.705 | 0.952 | 1.19 | 0.71 | 0.707 | 1.795 | 1.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14166
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom8_TN10mRNA_15011
|
3-Not_Clustered
|
0.751
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
8-30
|
0.968
|
— | — | — | — |
0.000
|
— | — |
0.065
|
0.033
|
0.009
|
0.167
|
0.289
|
0.452
|
0.336
|
0.001
|
0.705
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001865
|
2.000
|
2.000
|
Hsc_gene_5046.t1;Hsc_gene_6784.t1
|
Hsc_gene_6784.t1;Hsc_gene_6784.t2;Hsc_gene_6784.t3
|
— |
Q11098.4 Tetraspanin-17 [Caenorhabditis elegans]
|
KAI1725769.1 tetraspanin family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.967|GO:0009987_0.927|GO:0005575_0.924|GO:0110165_0.922|GO:0005886_0.914|GO:0016020_0.914|GO:0071944_0.914|GO:0051179_0.868|GO:0003674_0.849|GO:0005622_0.761|GO:0005737_0.755|GO:0005488_0.734|GO:0051641_0.728|GO:0005515_0.727|GO:0065007_0.617|GO:0006810_0.598|GO:0051234_0.598|GO:0050789_0.597|GO:0050896_0.586|GO:0051716_0.564|GO:0023052_0.563|GO:0007154_0.560
|
IPR000301+11-275+|IPR008952+126-231_127-195+|IPR018499+15-267_21-253+
|
— |
PF00335+15-267+Tetraspanin_family
|
— |
PTHR19282+21-253+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-300
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.685
|
34906.980
|
8.125
|
9.500
|
19.667
|
19.000
|
38.667
|
61.333
|
12.333
|
7.333
|
41.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkorange
|
233.969
|
147.424
|
215.745
|
185.255
|
151.217
|
218.516
|
222.833
|
243.434
|
52.941
|
464.750
|
288.260
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.321
|
— | — |
-0.325
|
0.546
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.