Hg_chrom8_TN10mRNA_15012
Organism: Heterodera glycines Gene Locus: chr8:433999-442576 Feature type: polypeptideProtein Sequence
Length: 777
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.748 | 1.437 | 1.076 | 0.178 | 0.751 | 1.056 | 0.797 | 1.287 | 1.459 | 1.27 | 0.722 | 1.817 | 1.502 | 1.188 | 1.287 | 0.846 | 0.823 | 0.839 | 0.792 | 1.136 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14167
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom8_TN10mRNA_15012
|
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-33
|
— |
0.703
|
— |
0.000
|
0.468
|
0.308
|
0.070
|
0.570
|
0.313
|
0.397
|
0.179
|
0.454
|
0.235
|
0.208
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011762
|
1.000
|
1.000
|
Hsc_gene_6782.t1
|
Hsc_gene_17356.t1;Hsc_gene_6782.t1
|
— |
P34422.2 Dipeptidyl peptidase family member 6 [Caenorhabditis elegans]
|
KAF7635959.1 Peptidase_S9 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008236
|
GO:0008150_0.900|GO:0003674_0.786|GO:0005575_0.693|GO:0110165_0.689|GO:0003824_0.678|GO:0008152_0.611|GO:0016787_0.596|GO:0140096_0.573|GO:0008233_0.563|GO:0044238_0.559|GO:0043170_0.551|GO:0019538_0.501
|
IPR001375+464-675+|IPR029058+354-677_398-674+
|
— |
PF00326+464-675+Prolyl_oligopeptidase_family
|
— |
PTHR42776+390-674+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;714-777
|
1.000
|
5-713
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
88099.730
|
8.748
|
15.000
|
24.067
|
12.870
|
45.302
|
54.698
|
13.642
|
10.425
|
48.391
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
lightyellow
|
842.457
|
19.571
|
80.604
|
106.561
|
180.508
|
2752.826
|
820.289
|
204.012
|
94.804
|
2053.005
|
1213.776
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.814
|
2.309
|
0.512
|
0.729
|
3.944
|
-1.736
|
-3.858
|
2.150
|
-4.560
|
— |
-3.192
|
— | — |