Hg_chrom8_TN10mRNA_15016
Organism: Heterodera glycines Gene Locus: chr8:452212-454459 Feature type: polypeptideProtein Sequence
Length: 193
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.843 | 1.446 | 1.13 | 0.536 | 1.036 | 0.93 | 0.925 | 1.036 | 2.073 | 1.47 | 1.413 | 2.133 | 1.295 | 0.697 | 0.634 | 0.888 | 0.595 | 0.55 | 0.399 | 0.152 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14171
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.434
|
0.404
|
0.036
|
0.492
|
0.081
|
0.152
|
0.218
|
0.080
|
0.237
|
0.228
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004683
|
2.000
|
1.000
|
Hsc_gene_6779.t1
|
Hsc_gene_6779.t1
|
— | — |
CDW53459.1 thiamin pyrophosphokinase 1 [Trichuris trichiura]
|
KAI5839226
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004788|GO:0005524|GO:0009229|GO:0030975
|
— |
IPR007371+1-90+|IPR007373+125-177+|IPR036371+118-186+|IPR036759+1-92_1-186+
|
— |
PF04263+1-90+Thiamin_pyrophosphokinase,_catalytic_domain|PF04265+125-177+Thiamin_pyrophosphokinase,_vitamin_B1_binding_domain
|
— |
PTHR13622+2-185+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-193
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
21299.710
|
7.294
|
2.000
|
26.943
|
7.772
|
46.632
|
53.368
|
14.508
|
12.435
|
46.114
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
1355.267
|
15035.961
|
579.193
|
86.249
|
9.044
|
29.393
|
15.816
|
29.292
|
0.000
|
9.938
|
5.678
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.928
|
-7.581
|
-2.638
|
-3.293
|
1.724
|
-0.886
|
— |
-0.745
|
— |
7.288
|
— | — | — |
No JSON data available for plots.