Hg_chrom8_TN10mRNA_15017
Organism: Heterodera glycines Gene Locus: chr8:455059-460592 Feature type: polypeptideProtein Sequence
Length: 386
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.602 | 1.386 | 1.178 | 1.519 | 0.691 | 1.926 | 0.987 | 1.036 | 0.979 | 1.155 | 0.864 | 0.762 | 1.871 | 1.096 | 0.317 | 0.666 | 1.359 | 0.628 | 0.996 | 1.067 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14172
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.178
|
0.130
|
0.026
|
0.446
|
0.150
|
0.118
|
0.109
|
0.003
|
0.105
|
0.651
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011763
|
1.000
|
1.000
|
Hsc_gene_6778.t1
|
— | — |
Q9N9H4.1 Aspartic protease 2 [Necator americanus]
|
KAI1697121.1 eukaryotic aspartyl protease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004190|GO:0006508
|
GO:0005575_0.825|GO:0110165_0.825|GO:0008150_0.713|GO:0005622_0.638|GO:0005737_0.628|GO:0016020_0.624|GO:0003674_0.599|GO:0043226_0.548|GO:0071944_0.535|GO:0043227_0.530|GO:0043229_0.529|GO:0043231_0.517
|
IPR001461+48-68_258-271_293-382_356-371+|IPR021109+3-263_20-382_292-384+|IPR033121+41-85_42-386_135-293+|IPR034164+42-379+
|
— |
PF00026+41-85_135-293+Eukaryotic_aspartyl_protease
|
— |
PTHR47966+293-382+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-386
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
43037.450
|
4.832
|
-9.000
|
19.948
|
13.731
|
46.373
|
53.627
|
9.326
|
10.622
|
53.109
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
green
|
11177.213
|
58.115
|
31.886
|
25.589
|
24.337
|
1053.521
|
619.623
|
66.204
|
59076.279
|
3888.371
|
27540.331
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.098
|
-1.320
|
— | — |
5.451
|
-0.757
|
-4.111
|
3.373
|
3.812
|
-11.003
|
-7.170
|
— | — |
No JSON data available for plots.