Hg_chrom8_TN10mRNA_15023
Organism: Heterodera glycines Gene Locus: chr8:486945-487580 Feature type: polypeptideProtein Sequence
Length: 183
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.254 | 1.652 | 0.497 | 1.131 | 1.73 | 0.701 | 0.39 | 0.273 | 2.307 | 1.329 | 1.242 | 0.964 | 2.58 | 0.841 | 0.669 | 0.546 | 0.448 | 0.662 | 0.841 | 2.572 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14178
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.609
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.252
|
— | — |
0.229
|
0.144
|
0.030
|
0.392
|
0.550
|
0.333
|
0.212
|
0.009
|
0.136
|
0.599
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000615
|
1.000
|
6.000
|
Hsc_gene_12256.t1;Hsc_gene_17457.t1;Hsc_gene_18093.t1;Hsc_gene_1829.t1;Hsc_gene_26685.t1;Hsc_gene_361.t1
|
— | — | — |
KAI3415248.1 hypothetical protein GPALN_004862 [Globodera pallida]
|
TLX72846
|
0.480
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-183
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
22163.780
|
5.102
|
-2.500
|
25.137
|
19.672
|
41.530
|
58.470
|
12.022
|
13.115
|
33.880
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
21.400
|
0.768
|
2.514
|
29.134
|
10.921
|
1.009
|
0.201
|
0.548
|
14.512
|
65.831
|
43.837
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.113
|
3.660
|
-1.453
|
-3.425
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.