SCN Proteipedia

Hg_chrom8_TN10mRNA_15027

Organism: Heterodera glycines Gene Locus: chr8:499465-503170 Feature type: polypeptide

Protein Sequence

Length: 193

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.422	1.566	0.471	0.715	0.864	0.797	0.37	2.591	1.957	1.61	1.256	1.829	2.015	1.096	1.057	1.036	0.68	0.55	1.196	0.457	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14182	—	—	0.778	1.000	1.000	1.000	1.000	1.000	1.000	—	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKNKAKNGISKRKR.	46-83	0.964	—	—	—	—	0.036	—	—	0.769	0.222	0.039	0.292	0.098	0.024	0.045	0.009	0.043	0.306

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001049	4.000	1.000	Hsc_gene_25140.t1	—	—	Q946J8.2 Chromo domain-containing protein LHP1 [Arabidopsis thaliana]	KAK2549973.1 Chromodomain Y-like protein 2 [Acropora cervicornis]	No	-0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006325\|GO:0031507	GO:0008150_0.886\|GO:0005575_0.869\|GO:0110165_0.869\|GO:0016020_0.819\|GO:0005622_0.812\|GO:0043226_0.785\|GO:0009987_0.781\|GO:0043229_0.778\|GO:0003674_0.770\|GO:0043227_0.755\|GO:0043231_0.750\|GO:0065007_0.679\|GO:0005488_0.672\|GO:0050789_0.660\|GO:0050794_0.636\|GO:0008152_0.617\|GO:0009058_0.608\|GO:0044237_0.600\|GO:0043170_0.596\|GO:0044249_0.593\|GO:0005634_0.587\|GO:0009059_0.582\|GO:0005515_0.568\|GO:0019222_0.564\|GO:0010467_0.563\|GO:0031323_0.554\|GO:0044238_0.549\|GO:0060255_0.549\|GO:0009889_0.539\|GO:0031326_0.538\|GO:0010468_0.537\|GO:0010556_0.537\|GO:0048519_0.537\|GO:0048523_0.523	IPR000953+118-172_119-178+\|IPR016197+76-167+\|IPR023779+136-156+\|IPR023780+119-165+\|IPR044251+117-189+	SM00298+118-172+	PF00385+119-165+Chromo_(CHRromatin_Organisation_MOdifier)_domain	—	PTHR47240+117-189+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	182-193	1.000	1-181	6v41_AAA	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.732	22585.560	10.336	16.000	26.425	15.544	47.668	52.332	18.653	7.772	38.860

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	69.977	139.513	222.735	94.203	20.436	10.368	3.448	77.496	0.000	93.073	53.185

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.447	-0.704	-1.134	-2.235	-0.964	-1.577	2.797	-4.348	-7.343	7.415	—	—	—

No JSON data available for plots.

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