Hg_chrom8_TN10mRNA_15028
Organism: Heterodera glycines Gene Locus: chr8:503711-505122 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.794 | 1.733 | 1.016 | 0.428 | 1.242 | 1.115 | 0.887 | 0.932 | 1.932 | 1.175 | 1.6 | 2.192 | 1.38 | 0.836 | 0.507 | 0.71 | 0.713 | 0.565 | 0.478 | 0.183 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14183
|
— | — |
1.444
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.621
|
0.411
|
0.139
|
0.442
|
0.170
|
0.069
|
0.059
|
0.013
|
0.419
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004683
|
2.000
|
1.000
|
Hsc_gene_6779.t1
|
— | — | — |
KAF7633223.1 TPK_B1_binding domain-containing protein [Meloidogyne graminicola]
|
MBL1213695
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004788|GO:0005524|GO:0009229|GO:0030975
|
— |
IPR007373+93-145+|IPR036371+85-154+|IPR036759+8-51_8-56_54-154+
|
— |
PF04265+93-145+Thiamin_pyrophosphokinase,_vitamin_B1_binding_domain
|
— |
PTHR13622+58-153+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-161
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
17918.650
|
7.246
|
1.500
|
27.950
|
8.075
|
49.068
|
50.932
|
14.907
|
13.043
|
45.963
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
385.717
|
4115.633
|
244.515
|
34.126
|
7.184
|
14.329
|
9.723
|
17.109
|
0.000
|
21.531
|
12.303
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.305
|
-7.050
|
-2.732
|
-2.286
|
1.017
|
— | — | — | — |
5.950
|
— | — | — |
No JSON data available for plots.