Hg_chrom8_TN10mRNA_15031
Organism: Heterodera glycines Gene Locus: chr8:520308-530465 Feature type: polypeptideProtein Sequence
Length: 980
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.115 | 1.756 | 0.686 | 0.387 | 0.765 | 1.701 | 0.984 | 2.194 | 0.476 | 0.648 | 0.68 | 1.02 | 0.822 | 1.177 | 1.354 | 1.443 | 1.405 | 0.588 | 0.706 | 0.51 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14186
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRS,RKRRRR,RRGRGSSSRTGTATVRRGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.895
|
0.100
|
0.007
|
0.392
|
0.050
|
0.014
|
0.028
|
0.043
|
0.037
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q5LJZ2.1 Histone-lysine N-methyltransferase SETD1 [Drosophila melanogaster]
|
KAF7634728.1 Histone-lysine N-methyltransferase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
GO:0008150_0.871|GO:0005575_0.833|GO:0110165_0.832|GO:0009987_0.814|GO:0005622_0.740|GO:0016020_0.728|GO:0003674_0.723|GO:0043226_0.705|GO:0043229_0.703|GO:0005634_0.644|GO:0043227_0.644|GO:0043231_0.644|GO:0016043_0.592|GO:0071840_0.592|GO:0003824_0.520|GO:0032502_0.515|GO:0140096_0.509|GO:0006325_0.508|GO:0006338_0.507
|
IPR012677+136-259+|IPR035979+134-235+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-84;285-980
|
1.000
|
85-284
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.974
|
106335.480
|
10.068
|
48.500
|
23.878
|
10.000
|
56.735
|
43.265
|
15.510
|
8.367
|
58.980
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1260.891
|
1194.219
|
691.752
|
638.894
|
670.060
|
667.134
|
743.683
|
427.399
|
1237.667
|
2700.721
|
2073.698
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.018
|
-1.040
|
— | — | — | — |
-0.745
|
0.940
|
— | — | — | — | — |
No JSON data available for plots.