Hg_chrom8_TN10mRNA_15035
Organism: Heterodera glycines Gene Locus: chr8:543201-545101 Feature type: polypeptideProtein Sequence
Length: 524
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.577 | 1.642 | 0.902 | 0.592 | 2.195 | 1.077 | 0.364 | 0.286 | 1.696 | 1.057 | 1.793 | 2.021 | 1.908 | 0.587 | 0.662 | 0.491 | 0.469 | 0.434 | 1.028 | 1.74 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14190
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
nucleus
|
KKLEEMLKKAEERKKQE,KRVSKNEAETNFSKLRKE
|
— | — | — | — |
1-24
|
0.713
|
0.781
|
0.000
|
0.000
|
0.724
|
0.167
|
0.013
|
0.562
|
0.156
|
0.122
|
0.063
|
0.052
|
0.152
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000025
|
31.000
|
1.000
|
Hsc_gene_14475.t1
|
— | — | — |
KAI3408684.1 hypothetical protein GPALN_007741 [Globodera pallida]
|
WP_149526736
|
0.420
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
489-524
|
1.000
|
1-488
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
62975.060
|
4.851
|
-14.500
|
33.779
|
14.695
|
51.336
|
48.664
|
15.649
|
18.130
|
33.969
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
25.099
|
1.224
|
3.760
|
190.112
|
12.365
|
0.636
|
0.202
|
0.280
|
39.109
|
2.257
|
18.051
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
7.142
|
5.758
|
-3.978
|
-4.274
|
— | — | — | — | — | — | — | — |