Hg_chrom8_TN10mRNA_15038
Organism: Heterodera glycines Gene Locus: chr8:565324-566128 Feature type: polypeptideProtein Sequence
Length: 132
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.793 | 0.705 | 0.826 | 0.522 | 0.505 | 1.554 | 0.631 | 0.379 | 2.189 | 1.536 | 0.918 | 2.228 | 1.473 | 0.728 | 1.701 | 0.758 | 0.994 | 0.918 | 2.331 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14193
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.342
|
0.188
|
0.041
|
0.542
|
0.404
|
0.273
|
0.282
|
0.179
|
0.086
|
0.169
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000368
|
7.000
|
1.000
|
Hsc_gene_24056.t2
|
Hsc_gene_24056.t2
|
— | — |
XP_044751633.1 zinc finger BED domain-containing protein 4-like [Coccinella septempunctata]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.923|GO:0110165_0.906|GO:0005622_0.853|GO:0016020_0.849|GO:0005737_0.830|GO:0043226_0.819|GO:0043229_0.815|GO:0003674_0.801|GO:0043227_0.783|GO:0043231_0.773|GO:0005488_0.743|GO:0005515_0.723|GO:0042802_0.670|GO:0005634_0.607|GO:0031974_0.576|GO:0043233_0.576|GO:0070013_0.576|GO:0031981_0.562|GO:0005654_0.551
|
IPR012337+20-127+|IPR052035+24-123+
|
— | — | — |
PTHR46481+24-123+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-132
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.534
|
15128.960
|
11.151
|
9.500
|
22.727
|
9.091
|
43.182
|
56.818
|
15.152
|
7.576
|
42.424
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
7.802
|
0.999
|
2.478
|
4.769
|
2.981
|
6.350
|
0.808
|
1.678
|
6.911
|
21.429
|
15.207
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.120
|
— | — | — |
-2.956
|
-2.029
|
— | — | — | — | — | — |
No JSON data available for plots.