Hg_chrom8_TN10mRNA_15040
Organism: Heterodera glycines Gene Locus: chr8:576588-579649 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.818 | 1.565 | 1.001 | 0.844 | 0.612 | 1.019 | 0.582 | 1.835 | 1.495 | 1.033 | 0.649 | 1.439 | 1.104 | 0.882 | 1.435 | 1.005 | 0.852 | 0.927 | 1.882 | 1.349 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14195
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.898
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RFHKRQR
|
27-51
|
0.988
|
73-100
|
0.968
|
— | — |
0.108
|
— | — |
0.055
|
0.106
|
0.037
|
0.120
|
0.114
|
0.150
|
0.305
|
0.013
|
0.216
|
0.896
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011765
|
1.000
|
1.000
|
Hsc_gene_11543.t1
|
Hsc_gene_11543.t1;Hsc_gene_3376.t1;Hsc_gene_3376.t2
|
— |
O62243.2 Zinc metalloproteinase nas-1 [Caenorhabditis elegans]
|
KAF7635918.1 Metalloendopeptidase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.748|GO:0003674_0.603|GO:0005575_0.601|GO:0110165_0.589
|
IPR001506+97-292_105-292_127-145_180-198_199-216_238-253_277-290+|IPR006026+102-243+|IPR024079+61-294+|IPR034035+108-289+
|
SM00235+102-243+
|
PF01400+105-292+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+85-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-327
|
6ht9_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
37599.840
|
8.787
|
13.000
|
24.159
|
14.679
|
47.095
|
52.905
|
14.985
|
9.174
|
49.541
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
50.009
|
37.069
|
34.726
|
16.735
|
34.891
|
46.003
|
7.122
|
41.024
|
25.590
|
118.007
|
78.400
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.285
|
-0.946
|
1.029
|
— |
-2.677
|
— |
-2.373
|
— | — | — | — | — |
No JSON data available for plots.