Hg_chrom8_TN10mRNA_15041
Organism: Heterodera glycines Gene Locus: chr8:580851-584744 Feature type: polypeptideProtein Sequence
Length: 382
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.548 | 1.644 | 1.095 | 0.632 | 1.091 | 1.208 | 0.467 | 1.44 | 1.687 | 1.415 | 1.19 | 1.386 | 1.818 | 0.755 | 0.908 | 1.01 | 0.687 | 0.754 | 0.604 | 0.616 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14196
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
chloroplast
|
— |
24-46
|
0.981
|
11-31
|
0.903
|
1-22
|
0.924
|
0.995
|
0.000
|
0.000
|
0.737
|
0.151
|
0.006
|
0.531
|
0.055
|
0.096
|
0.038
|
0.002
|
0.135
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003229
|
2.000
|
1.000
|
Hsc_gene_11542.t1
|
Hsc_gene_11542.t1
|
— |
Q20681.1 BTB and MATH domain-containing protein 38 [Caenorhabditis elegans]
|
KAI3410462.1 hypothetical protein GPALN_004564 [Globodera pallida]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR000210+165-261_165-291+|IPR008974+25-159+|IPR011333+161-325_166-289+
|
SM00225+165-291+
|
— | — |
PTHR22744+54-369+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
346-382
|
1.000
|
1-345
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
43987.480
|
7.237
|
4.500
|
27.749
|
12.304
|
50.785
|
49.215
|
15.183
|
12.565
|
43.717
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
142.293
|
3.681
|
133.590
|
172.328
|
43.728
|
8.339
|
3.639
|
5.814
|
456.044
|
141.327
|
276.206
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.954
|
5.415
|
0.476
|
-2.012
|
-2.375
|
— | — | — | — | — | — | — | — |