Hg_chrom8_TN10mRNA_15053
Organism: Heterodera glycines Gene Locus: chr8:652714-660084 Feature type: polypeptideProtein Sequence
Length: 573
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.751 | 1.38 | 0.952 | 1.805 | 0.931 | 1.163 | 0.54 | 1.832 | 1.319 | 1.486 | 0.635 | 1.232 | 0.921 | 0.94 | 1.318 | 0.898 | 1.03 | 0.82 | 0.805 | 0.565 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14208
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.346
|
0.191
|
0.015
|
0.377
|
0.278
|
0.382
|
0.433
|
0.019
|
0.619
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004686
|
2.000
|
1.000
|
Hsc_gene_9514.t1
|
Hsc_gene_9514.t1
|
— |
P34284.3 F-box/LRR-repeat protein fbxl-1 [Caenorhabditis elegans]
|
KAF7635900.1 F-box domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.800|GO:0110165_0.800|GO:0008150_0.798|GO:0065007_0.685|GO:0050789_0.674|GO:0005622_0.586|GO:0003674_0.538|GO:0016020_0.528
|
IPR001611+313-331_463-486+|IPR001810+164-210_170-210_170-211+|IPR006553+232-257_258-283_284-309_310-335_360-385_386-411_412-437_438-462_463-488_490-515_518-540+|IPR032675+208-437_440-549+|IPR036047+169-250+|IPR050648+190-389+
|
SM00256+170-210+|SM00367+232-257_258-283_284-309_310-335_360-385_386-411_412-437_438-462_463-488_490-515_518-540+
|
PF12937+170-211+F-box-like|PF13516+313-331_463-486+Leucine_Rich_repeat
|
— |
PTHR13382+190-389+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;117-160
|
2.000
|
2-116;161-573
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
64582.130
|
7.272
|
9.500
|
25.131
|
9.948
|
48.168
|
51.832
|
14.311
|
10.820
|
50.262
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
3758.197
|
2668.560
|
3738.458
|
2504.370
|
1459.330
|
2057.912
|
1559.455
|
5044.048
|
1495.512
|
8183.430
|
5317.179
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.258
|
-0.229
|
-0.470
|
-0.812
|
0.511
|
-0.393
|
1.185
|
-1.552
|
— | — | — | — | — |
No JSON data available for plots.