Hg_chrom8_TN10mRNA_15056
Organism: Heterodera glycines Gene Locus: chr8:690196-696415 Feature type: polypeptideProtein Sequence
Length: 1,275
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.83 | 2.353 | 0.756 | 0.108 | 0.627 | 2.212 | 0.439 | 0.902 | 1.255 | 1.017 | 0.927 | 1.522 | 0.937 | 1.282 | 0.592 | 1.356 | 1.311 | 0.832 | 0.362 | 0.623 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14210
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KKRTHSIELGTPRKKSN,KRKSPNKGASKKIKENRKKA
|
— | — | — | — |
1-21
|
0.578
|
0.999
|
0.000
|
0.000
|
0.833
|
0.063
|
0.004
|
0.440
|
0.052
|
0.046
|
0.027
|
0.010
|
0.070
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002261
|
3.000
|
1.000
|
Hsc_gene_3819.t1
|
— | — | — | — |
MBW3019689
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-127;165-1008
|
2.000
|
128-164;1009-1275
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.926
|
140857.090
|
9.511
|
25.500
|
18.745
|
7.765
|
54.980
|
45.020
|
10.824
|
7.922
|
55.059
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
184.207
|
0.840
|
37.469
|
88.763
|
22.292
|
3.278
|
1.614
|
1.107
|
687.281
|
232.184
|
427.226
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.249
|
6.583
|
1.354
|
-2.031
|
-2.752
|
— | — | — | — |
-2.785
|
— | — | — |