SCN Proteipedia

Hg_chrom8_TN10mRNA_15066

Organism: Heterodera glycines Gene Locus: chr8:781172-798516 Feature type: polypeptide

Protein Sequence

Length: 1,539

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.043	0.756	0.803	0.874	0.65	1.549	0.936	2.177	1.227	1.229	0.433	1.682	1.318	0.95	1.233	1.3	0.969	0.729	0.55	0.612	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14219	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	FKRR,KRRK,RRKR	—	—	—	—	—	—	0.000	—	—	0.094	0.169	0.037	0.119	0.379	0.525	0.339	0.011	0.816	0.033

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002466	1.000	3.000	Hsc_gene_13509.t1;Hsc_gene_13509.t2;Hsc_gene_13509.t3	Hsc_gene_13508.t1;Hsc_gene_13509.t2;Hsc_gene_13509.t3	—	A2AJN7.1 Solute carrier family 4 member 11 [Mus musculus]	KAI3408688.1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005452\|GO:0006820\|GO:0016020	GO:0008150_0.978\|GO:0009987_0.945\|GO:0005575_0.898\|GO:0110165_0.892\|GO:0051179_0.870\|GO:0006810_0.859\|GO:0051234_0.859\|GO:0016020_0.856\|GO:0071944_0.826\|GO:0005886_0.820\|GO:0003674_0.809\|GO:0065007_0.723\|GO:0055085_0.710\|GO:0006811_0.676\|GO:0034220_0.664\|GO:0005215_0.625\|GO:0022857_0.625\|GO:0098660_0.622\|GO:0015075_0.606\|GO:0015318_0.588\|GO:0015711_0.570\|GO:0015701_0.553\|GO:0008514_0.544\|GO:0022804_0.544\|GO:0015106_0.536\|GO:0042592_0.507	IPR003020+772-1536+\|IPR011531+987-1537+\|IPR016152+786-954_865-968+	—	PF00955+987-1537+HCO3-_transporter_integral_membrane_domain	G3DSA:1.10.287.570:FF:000002+998-1043+Solute_carrier_family_4_member_11\|G3DSA:3.40.930.10:FF:000018+863-964+Sodium_bicarbonate_transporter_protein_11	PTHR11453+772-1536+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-601	1.000	602-1539	7x1j_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.812	168655.840	8.027	42.500	21.572	11.891	45.874	54.126	13.255	8.317	51.787

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	3012.941	1069.041	2452.184	821.520	261.998	314.967	315.262	1420.027	2608.669	8729.492	6106.282

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.969	-0.518	-1.470	-1.680	—	—	2.073	-2.031	—	—	-4.512	—	—

No JSON data available for plots.

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