Hg_chrom8_TN10mRNA_15067
Organism: Heterodera glycines Gene Locus: chr8:806492-807677 Feature type: polypeptideProtein Sequence
Length: 230
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.91 | 0.708 | 0.87 | 0.6 | 1.594 | 0.446 | 0.88 | 1.087 | 1.643 | 1.116 | 1.647 | 1.279 | 0.966 | 0.585 | 0.799 | 1.18 | 0.57 | 0.922 | 1.003 | 1.023 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14220
|
— | — |
0.667
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— | — |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — |
4-40
|
0.879
|
— | — | — | — |
0.000
|
— | — |
0.449
|
0.520
|
0.018
|
0.470
|
0.164
|
0.086
|
0.042
|
0.122
|
0.141
|
0.123
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001365
|
3.000
|
2.000
|
Hsc_gene_18077.t1;Hsc_gene_18077.t2
|
— | — | — |
MDL2232822.1 ATP-dependent zinc metalloprotease FtsH [Ruminococcaceae bacterium OttesenSCG-928-L11]
|
MBP9758576
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
GO:0005575_0.902|GO:0110165_0.901|GO:0005622_0.823|GO:0008150_0.794|GO:0016020_0.779|GO:0043226_0.759|GO:0005737_0.755|GO:0043229_0.747|GO:0043227_0.696|GO:0043231_0.661|GO:0008152_0.631|GO:0044238_0.615|GO:0009987_0.595|GO:0043170_0.580|GO:0019538_0.563
|
IPR000642+39-214+|IPR037219+40-219_41-226+
|
— |
PF01434+39-214+Peptidase_family_M41
|
— |
PTHR23076+37-219+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-230
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
25695.540
|
7.738
|
3.500
|
31.304
|
10.435
|
47.826
|
52.174
|
16.957
|
14.348
|
45.652
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
92.562
|
0.000
|
2.612
|
271.923
|
51.577
|
12.426
|
4.051
|
38.432
|
103.128
|
184.730
|
149.757
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.727
|
12.516
|
6.803
|
-2.434
|
-2.039
|
-1.611
|
1.525
|
-3.108
|
— | — | — | — | — |
No JSON data available for plots.