Hg_chrom8_TN10mRNA_15070
Organism: Heterodera glycines Gene Locus: chr8:871458-881992 Feature type: polypeptideProtein Sequence
Length: 792
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.587 | 1.028 | 0.62 | 0.522 | 0.652 | 1.716 | 1.894 | 2.462 | 0.533 | 1.16 | 0.727 | 1.114 | 0.491 | 2.817 | 1.16 | 0.649 | 0.849 | 0.402 | 0.194 | 0.52 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14223
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— |
KRSR,RRTLRSLYDDRRRQRD,PKGEKGDLGPPGLPGQPGKKGRKQHHHHHKQHH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.144
|
0.069
|
0.003
|
0.185
|
0.457
|
0.143
|
0.264
|
0.039
|
0.528
|
0.353
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000918
|
3.000
|
3.000
|
Hsc_gene_22005.t1;Hsc_gene_22005.t2;Hsc_gene_22005.t4
|
Hsc_gene_22005.t1;Hsc_gene_22005.t2;Hsc_gene_22005.t4;Hsc_gene_22005.t5;Hsc_gene_22005.t6
|
F29C4.8a;F29C4.8b;F29C4.8c;F29C4.8d;F29C4.8e;F29C4.8f;F29C4.8g;F29C4.8h;F29C4.8i
|
— |
KAI3410986.1 hypothetical protein GPALN_003070 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008160+254-303_387-443_677-731_707-757+|IPR050938+206-383+
|
— |
PF01391+254-303_387-443_677-731_707-757+Collagen_triple_helix_repeat_(20_copies)
|
— |
PTHR37456+206-383+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-89;176-792
|
1.000
|
90-175
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.953
|
83587.030
|
10.043
|
44.500
|
22.727
|
8.712
|
43.561
|
56.439
|
15.404
|
7.323
|
57.323
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
966.972
|
233.635
|
458.239
|
191.449
|
79.113
|
110.619
|
170.558
|
222.286
|
142.672
|
3573.789
|
2103.310
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.744
|
-0.424
|
-1.151
|
-1.308
|
0.499
|
0.635
|
0.902
|
— | — | — |
-3.150
|
— | — |
No JSON data available for plots.