Hg_chrom8_TN10mRNA_15072
Organism: Heterodera glycines Gene Locus: chr8:871458-883727 Feature type: polypeptideProtein Sequence
Length: 559
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.666 | 1.123 | 0.651 | 0.617 | 0.745 | 1.468 | 1.597 | 2.236 | 0.398 | 1.015 | 0.894 | 1.158 | 0.696 | 2.546 | 1.241 | 0.792 | 1.085 | 0.434 | 0.275 | 0.474 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14223
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRSR,RRTLRSLYDDRRRQRD,GPKGEKGDLGPPGLPGQPGKKGRKGLPGPKGDTGPLGPPG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.145
|
0.050
|
0.002
|
0.158
|
0.505
|
0.171
|
0.310
|
0.040
|
0.607
|
0.368
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000918
|
3.000
|
3.000
|
Hsc_gene_22005.t1;Hsc_gene_22005.t2;Hsc_gene_22005.t4
|
Hsc_gene_22005.t1;Hsc_gene_22005.t2;Hsc_gene_22005.t4;Hsc_gene_22005.t5;Hsc_gene_22005.t6
|
F29C4.8a;F29C4.8b;F29C4.8c;F29C4.8d;F29C4.8e;F29C4.8f;F29C4.8g;F29C4.8h;F29C4.8i;F29C4.8j;F29C4.8k;F29C4.8l;F29C4.8m;F29C4.8n;F29C4.8o;F29C4.8p;F29C4.8q
|
— |
KAI3410986.1 hypothetical protein GPALN_003070 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008160+254-303_442-497+|IPR050938+206-420+
|
— |
PF01391+254-303_442-497+Collagen_triple_helix_repeat_(20_copies)
|
— |
PTHR37456+206-420+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-89;176-559
|
1.000
|
90-175
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.978
|
59724.070
|
10.166
|
34.500
|
24.508
|
8.945
|
47.227
|
52.773
|
16.458
|
8.050
|
57.603
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
966.972
|
233.635
|
458.239
|
191.449
|
79.113
|
110.619
|
170.558
|
222.286
|
142.672
|
3573.789
|
2103.310
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.744
|
-0.424
|
-1.151
|
-1.308
|
0.499
|
0.635
|
0.902
|
— | — | — |
-3.150
|
— | — |
No JSON data available for plots.