SCN Proteipedia

Hg_chrom8_TN10mRNA_15074

Organism: Heterodera glycines Gene Locus: chr8:910640-922587 Feature type: polypeptide

Protein Sequence

Length: 1,064

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.257	0.809	0.889	0.356	1.096	1.928	0.873	1.692	0.794	1.181	0.897	1.824	1.044	0.886	1.017	0.967	1.017	0.684	0.506	0.636	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14225	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Not_Clustered	0.737

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	KRIGSGEEDAREIKKQRF,RKPKLERQKRLFNLKERKATARR	—	—	—	—	—	—	0.000	—	—	0.332	0.223	0.044	0.619	0.114	0.296	0.216	0.011	0.594	0.054

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011773	1.000	1.000	Hsc_gene_26600.t1	Hsc_gene_21997.t1;Hsc_gene_26600.t1	—	Q16513.1 Serine/threonine-protein kinase N2 [Homo sapiens]	KAI1718759.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468\|GO:0007165	GO:0008150_0.890\|GO:0005575_0.858\|GO:0110165_0.853\|GO:0009987_0.847\|GO:0003674_0.838\|GO:0003824_0.838\|GO:0140096_0.838\|GO:0004672_0.834\|GO:0016301_0.834\|GO:0016740_0.834\|GO:0016772_0.834\|GO:0016773_0.834\|GO:0065007_0.819\|GO:0050789_0.813\|GO:0050794_0.765\|GO:0050896_0.752\|GO:0005622_0.742\|GO:0004674_0.680\|GO:0016020_0.680\|GO:0048518_0.658\|GO:0071840_0.636\|GO:0032501_0.624\|GO:0051716_0.622\|GO:0016043_0.618\|GO:0007154_0.616\|GO:0071944_0.613\|GO:0023052_0.612\|GO:0008152_0.609\|GO:0007165_0.599\|GO:0032502_0.594\|GO:0048856_0.594\|GO:0048522_0.560\|GO:0044238_0.558\|GO:0043170_0.547\|GO:0005737_0.544\|GO:0044237_0.537\|GO:0005886_0.536\|GO:0043226_0.515	IPR000719+731-990_733-990+\|IPR000961+991-1055_991-1063+\|IPR008271+852-864+\|IPR011009+727-1038+\|IPR011072+33-103_120-201_134-202_135-198+\|IPR017441+737-760+\|IPR017892+1011-1053+\|IPR035892+364-499_367-501+\|IPR036274+30-97_130-204+	SM00133+991-1055+\|SM00220+731-990+\|SM00742+33-103_134-202+	PF00069+733-990+Protein_kinase_domain\|PF00433+1011-1053+Protein_kinase_C_terminal_domain\|PF02185+135-198+Hr1_repeat	G3DSA:1.10.510.10:FF:000038+817-1021+serine/threonine-protein_kinase_N2_isoform_X1\|G3DSA:3.30.200.20:FF:000058+728-836+Putative_serine/threonine-protein_kinase_N2	PTHR24351+672-1055+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-359;552-718;1063-1064	2.000	360-551;719-1062	4crs_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.658	117118.120	7.140	12.000	25.752	9.962	49.718	50.282	14.286	11.466	49.624

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	2064.139	1876.603	1496.290	1568.542	2026.216	1781.520	1257.941	1418.413	2778.947	2661.824	2712.019

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.555	-0.396	0.176	0.338	-0.171	-0.492	-0.434	—	—	—	—	—	—

No JSON data available for plots.

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