Hg_chrom8_TN10mRNA_15075
Organism: Heterodera glycines Gene Locus: chr8:931757-935360 Feature type: polypeptideProtein Sequence
Length: 649
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.591 | 1.039 | 0.981 | 1.063 | 1.31 | 0.672 | 0.257 | 1.156 | 1.644 | 1.395 | 1.611 | 1.178 | 1.412 | 0.593 | 1.163 | 1.321 | 0.884 | 0.747 | 0.948 | 0.589 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14226
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
17-51
|
0.974
|
16-50
|
0.997
|
— | — |
0.000
|
— | — |
0.719
|
0.187
|
0.120
|
0.307
|
0.141
|
0.126
|
0.087
|
0.028
|
0.092
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000422
|
6.000
|
2.000
|
Hsc_gene_18013.t1;Hsc_gene_18123.t1
|
Hsc_gene_18013.t1;Hsc_gene_18123.t1;Hsc_gene_3841.t1
|
— | — |
KAH7705065.1 zinc finger protein, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.913|GO:0110165_0.905|GO:0005622_0.892|GO:0043226_0.842|GO:0043229_0.830|GO:0016020_0.825|GO:0005737_0.798|GO:0043227_0.793|GO:0043231_0.774|GO:0005634_0.676|GO:0003674_0.641|GO:0005488_0.596|GO:0031974_0.588|GO:0043233_0.588|GO:0070013_0.588|GO:0031981_0.587|GO:0005654_0.570|GO:0005515_0.556|GO:0008150_0.514
|
IPR008906+565-640+|IPR012337+198-643+|IPR052035+59-649+
|
— |
PF05699+565-640+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+59-649+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-649
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
75070.010
|
9.140
|
27.500
|
31.895
|
10.632
|
53.621
|
46.379
|
18.644
|
13.251
|
42.835
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
69.442
|
0.464
|
26.345
|
26.175
|
6.533
|
1.021
|
0.406
|
3.611
|
193.313
|
134.615
|
159.772
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.610
|
5.694
|
— |
-2.027
|
-2.674
|
— | — |
-3.013
|
— | — | — | — | — |
No JSON data available for plots.