Hg_chrom8_TN10mRNA_15081
Organism: Heterodera glycines Gene Locus: chr8:956804-958626 Feature type: polypeptideProtein Sequence
Length: 330
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.634 | 1.198 | 0.937 | 0.313 | 1.313 | 0.932 | 0.253 | 0.909 | 1.751 | 1.72 | 1.423 | 0.535 | 1.431 | 0.524 | 1.299 | 1.082 | 0.845 | 1.056 | 0.932 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14232
|
— | — |
1.889
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
3.000
|
3.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — |
27-59
|
0.990
|
— | — |
0.000
|
— | — |
0.809
|
0.195
|
0.022
|
0.306
|
0.345
|
0.189
|
0.143
|
0.330
|
0.046
|
0.361
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000517
|
5.000
|
2.000
|
Hsc_gene_15174.t1;Hsc_gene_22790.t1
|
— | — | — |
KAI1702299.1 zinc finger BED domain-containing protein 4 [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.930|GO:0110165_0.929|GO:0005622_0.888|GO:0016020_0.876|GO:0043226_0.857|GO:0043229_0.846|GO:0005737_0.818|GO:0003674_0.810|GO:0043227_0.810|GO:0043231_0.799|GO:0005488_0.760|GO:0005515_0.741|GO:0042802_0.668|GO:0005634_0.621|GO:0031974_0.577|GO:0043233_0.577|GO:0070013_0.577|GO:0031981_0.573|GO:0005654_0.557
|
IPR012337+9-317+|IPR052035+2-315+
|
— | — | — |
PTHR46481+2-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-330
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
38237.410
|
9.830
|
12.000
|
30.606
|
10.000
|
52.121
|
47.879
|
17.576
|
13.030
|
41.212
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
3.327
|
1.209
|
11.205
|
7.903
|
2.085
|
0.507
|
0.607
|
0.839
|
7.230
|
0.000
|
3.099
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.970
|
2.562
|
— |
-1.936
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.