Hg_chrom8_TN10mRNA_15082
Organism: Heterodera glycines Gene Locus: chr8:978708-982783 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.648 | 0.887 | 1.44 | 1.112 | 0.929 | 1.579 | 0.628 | 2.346 | 1.434 | 1.268 | 0.889 | 1.208 | 1.548 | 0.62 | 0.958 | 1.047 | 0.337 | 1.022 | 0.451 | 1.121 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14233
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.713
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.465
|
0.380
|
0.133
|
0.617
|
0.329
|
0.501
|
0.314
|
0.022
|
0.190
|
0.250
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002467
|
3.000
|
1.000
|
Hsc_gene_16298.t1
|
Hsc_gene_21996.t2;Hsc_gene_21996.t3;Hsc_gene_24509.t1;Hsc_gene_24510.t1
|
— |
P14065.1 Glycerol 2-dehydrogenase (NADP(+)) [Saccharomyces cerevisiae S288C]
|
KAI1730916.1 aldo/keto reductase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.780|GO:0003674_0.730|GO:0005575_0.719|GO:0110165_0.714|GO:0005622_0.647|GO:0003824_0.626|GO:0008152_0.612|GO:0009987_0.609|GO:0005737_0.578|GO:0044238_0.572|GO:0016020_0.550|GO:0016491_0.523|GO:0043226_0.514
|
IPR020471+1-257_24-48_149-166_184-213+|IPR023210+16-267+|IPR036812+1-321_13-265+
|
— |
PF00248+16-267+Aldo/keto_reductase_family
|
— |
PTHR43827+1-257+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-341
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
39073.440
|
6.290
|
-2.000
|
28.739
|
14.663
|
48.094
|
51.906
|
15.249
|
13.490
|
45.161
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
323.859
|
159.371
|
785.332
|
216.673
|
85.400
|
209.924
|
39.777
|
678.869
|
206.076
|
446.570
|
343.501
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.070
|
0.306
|
-1.748
|
-1.375
|
1.312
|
-2.388
|
1.586
|
-3.947
|
— | — | — | — | — |
No JSON data available for plots.