Hg_chrom8_TN10mRNA_15084
Organism: Heterodera glycines Gene Locus: chr8:992497-997720 Feature type: polypeptideProtein Sequence
Length: 542
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.644 | 1.03 | 1.141 | 0.827 | 1.138 | 1.561 | 0.637 | 1.476 | 1.599 | 1.247 | 0.978 | 1.194 | 1.281 | 0.674 | 1.13 | 1.081 | 0.484 | 1.006 | 0.568 | 1.085 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14235
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RPRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.364
|
0.321
|
0.044
|
0.656
|
0.203
|
0.298
|
0.293
|
0.081
|
0.155
|
0.199
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002467
|
3.000
|
1.000
|
Hsc_gene_16298.t1
|
Hsc_gene_16298.t1;Hsc_gene_21996.t1;Hsc_gene_21996.t4
|
— |
P14065.1 Glycerol 2-dehydrogenase (NADP(+)) [Saccharomyces cerevisiae S288C]
|
KAI1730916.1 aldo/keto reductase family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.811|GO:0005575_0.741|GO:0003674_0.734|GO:0110165_0.734|GO:0005622_0.658|GO:0009987_0.653|GO:0008152_0.628|GO:0003824_0.603|GO:0016020_0.594|GO:0044238_0.574|GO:0005737_0.556|GO:0043226_0.545|GO:0016491_0.524|GO:0043227_0.514
|
IPR020471+175-437_204-228_329-346_364-393+|IPR023210+196-447+|IPR036812+172-447_172-468+|IPR046350+47-120+
|
— |
PF00248+196-447+Aldo/keto_reductase_family
|
— |
PTHR43827+175-437+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29
|
1.000
|
30-542
|
3d3f_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.571
|
61972.730
|
6.699
|
2.000
|
28.044
|
11.993
|
49.077
|
50.923
|
14.945
|
13.100
|
44.649
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
739.315
|
354.095
|
1228.571
|
357.116
|
108.722
|
317.498
|
112.333
|
1557.096
|
236.514
|
1543.831
|
983.552
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.565
|
— |
-1.674
|
-1.746
|
1.560
|
-1.490
|
2.195
|
-3.654
|
— | — | — | — | — |
No JSON data available for plots.