Hg_chrom8_TN10mRNA_15085
Organism: Heterodera glycines Gene Locus: chr8:992499-997719 Feature type: polypeptideProtein Sequence
Length: 530
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.636 | 1.053 | 1.132 | 0.846 | 1.101 | 1.597 | 0.606 | 1.509 | 1.635 | 1.249 | 0.943 | 1.221 | 1.31 | 0.689 | 1.155 | 1.051 | 0.464 | 1.029 | 0.581 | 1.11 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14235
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKKK,RPRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.358
|
0.330
|
0.034
|
0.653
|
0.184
|
0.270
|
0.240
|
0.043
|
0.161
|
0.211
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002467
|
3.000
|
1.000
|
Hsc_gene_16298.t1
|
Hsc_gene_16298.t1;Hsc_gene_21996.t4;Hsc_gene_23302.t1;Hsc_gene_23302.t2;Hsc_gene_24509.t1
|
— |
P14065.1 Glycerol 2-dehydrogenase (NADP(+)) [Saccharomyces cerevisiae S288C]
|
KAI1730916.1 aldo/keto reductase family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.812|GO:0005575_0.737|GO:0003674_0.734|GO:0110165_0.728|GO:0009987_0.655|GO:0005622_0.651|GO:0008152_0.630|GO:0003824_0.606|GO:0016020_0.591|GO:0044238_0.574|GO:0005737_0.557|GO:0043226_0.545|GO:0016491_0.524|GO:0043227_0.511
|
IPR020471+163-425_192-216_317-334_352-381+|IPR023210+184-435+|IPR036812+160-435_160-456+|IPR046350+47-141+
|
— |
PF00248+184-435+Aldo/keto_reductase_family
|
— |
PTHR43827+163-425+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28
|
1.000
|
29-530
|
3d3f_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
60769.460
|
6.802
|
3.000
|
27.736
|
12.264
|
48.679
|
51.321
|
14.906
|
12.830
|
44.340
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
739.315
|
354.095
|
1228.571
|
357.116
|
108.722
|
317.498
|
112.333
|
1557.096
|
236.514
|
1543.831
|
983.552
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.565
|
— |
-1.674
|
-1.746
|
1.560
|
-1.490
|
2.195
|
-3.654
|
— | — | — | — | — |
No JSON data available for plots.