Hg_chrom8_TN10mRNA_15089
Organism: Heterodera glycines Gene Locus: chr8:1021588-1026811 Feature type: polypeptideProtein Sequence
Length: 545
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.917 | 0.896 | 1.001 | 0.949 | 0.856 | 1.647 | 0.874 | 0.826 | 1.346 | 1.017 | 0.723 | 1.835 | 1.58 | 0.741 | 0.899 | 0.97 | 1.233 | 1.001 | 0.847 | 0.594 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14239
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KQRKKQKSGKK,KKGTFGCSLQAGHFRAMRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.098
|
0.139
|
0.072
|
0.170
|
0.244
|
0.406
|
0.288
|
0.036
|
0.695
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011775
|
1.000
|
1.000
|
Hsc_gene_24514.t1
|
Hsc_gene_24514.t1
|
— |
A8XI14.1 Sugar transporter SWEET1 [Caenorhabditis briggsae]
|
KAI6181164.1 Sugar transporter SWEET1 [Aphelenchoides besseyi];KAI6212021.1 Sugar transporter SWEET1 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0051119
|
GO:0008150_0.892|GO:0009987_0.812|GO:0005575_0.784|GO:0110165_0.784|GO:0016020_0.750|GO:0051179_0.736|GO:0071944_0.729|GO:0005886_0.722|GO:0006810_0.699|GO:0051234_0.699|GO:0003674_0.694|GO:0055085_0.639|GO:0005215_0.565|GO:0022857_0.565
|
IPR004316+14-98_129-213+|IPR047664+19-212+
|
— |
PF03083+14-98_129-213+Sugar_efflux_transporter_for_intercellular_exchange
|
G3DSA:1.20.1280.290:FF:000004+126-215+Sugar_transporter_SWEET|G3DSA:1.20.1280.290:FF:000010+12-101+Sugar_transporter_SWEET
|
PTHR10791+19-212+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
295-545
|
1.000
|
1-294
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.582
|
60221.690
|
5.874
|
-3.500
|
21.468
|
10.459
|
46.055
|
53.945
|
10.826
|
10.642
|
52.110
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
7930.169
|
1491.207
|
7359.773
|
9041.216
|
23133.556
|
27510.274
|
2122.409
|
10978.171
|
1040.413
|
3300.452
|
2331.864
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.077
|
2.463
|
0.403
|
1.323
|
0.266
|
-3.689
|
-1.423
|
-2.234
|
— |
3.256
|
3.364
|
— | — |
No JSON data available for plots.