Hg_chrom8_TN10mRNA_15103
Organism: Heterodera glycines Gene Locus: chr8:1148004-1150677 Feature type: polypeptideProtein Sequence
Length: 243
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.383 | 1.531 | 0.823 | 0.284 | 1.303 | 1.161 | 0.882 | 2.469 | 0.914 | 1.223 | 0.686 | 0.726 | 1.943 | 1.029 | 0.588 | 0.882 | 1.349 | 1.122 | 1.583 | 0.605 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14253
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom8_TN10mRNA_15103
|
3-Not_Clustered
|
0.506
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-20
|
0.996
|
1.000
|
0.000
|
0.000
|
0.179
|
0.200
|
0.062
|
0.569
|
0.114
|
0.132
|
0.058
|
0.005
|
0.202
|
0.547
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011783
|
1.000
|
1.000
|
Hsc_gene_19176.t1
|
Hsc_gene_19176.t1
|
— |
Q10462.3 Putative carbonic anhydrase 5 [Caenorhabditis elegans]
|
KAH7699574.1 Eukaryotic-type carbonic anhydrase family protein, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004089|GO:0008270
|
GO:0003674_0.785|GO:0005575_0.755|GO:0110165_0.755|GO:0008150_0.697|GO:0003824_0.629|GO:0005622_0.597|GO:0005737_0.586|GO:0016020_0.527|GO:0016829_0.503
|
IPR001148+12-243_16-240_36-229+|IPR018338+120-136+|IPR023561+36-230+|IPR036398+14-235_22-230+
|
SM01057+16-240+
|
PF00194+36-229+Eukaryotic-type_carbonic_anhydrase
|
— |
PTHR18952+36-230+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-243
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
27561.850
|
5.479
|
-6.000
|
24.691
|
16.049
|
50.206
|
49.794
|
12.346
|
12.346
|
49.794
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
2308.146
|
1.383
|
135.341
|
12.259
|
2.981
|
2.525
|
18.472
|
0.280
|
13167.816
|
157.312
|
5733.242
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.386
|
3.015
|
-3.354
|
-2.074
|
— |
2.891
|
— |
6.211
|
6.299
|
-9.947
|
-5.428
|
— | — |