Hg_chrom8_TN10mRNA_15104
Organism: Heterodera glycines Gene Locus: chr8:1153952-1154998 Feature type: polypeptideProtein Sequence
Length: 252
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.877 | 1.477 | 0.794 | 1.232 | 0.794 | 1.323 | 1.464 | 0.397 | 1.323 | 0.912 | 1.563 | 0.7 | 1.323 | 0.229 | 0.486 | 0.907 | 1.236 | 0.962 | 0.916 | 0.35 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14254
|
— | — |
1.778
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_1885;Hsc_gene_19177;Hsc_gene_22780;Hsc_gene_22783;Hsc_gene_19185
|
— |
Hg_chrom8_TN10mRNA_15104
|
9-Not_Clustered
|
0.907
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
cytoplasm|extracellular
|
— | — | — | — | — | — |
1-20
|
0.994
|
1.000
|
0.000
|
0.000
|
0.469
|
0.215
|
0.013
|
0.495
|
0.540
|
0.064
|
0.217
|
0.007
|
0.330
|
0.849
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002043
|
3.000
|
1.000
|
Hsc_gene_19177.t1
|
Hsc_gene_19177.t1;Hsc_gene_19185.t1
|
— |
Q5BA88.1 Probable pectate lyase D [Aspergillus nidulans FGSC A4]
|
ADW77535.1 pectate lyase [Heterodera glycines]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576|GO:0030570
|
GO:0008150_0.927|GO:0003674_0.858|GO:0008152_0.760|GO:0044238_0.748|GO:0043170_0.737|GO:0003824_0.718|GO:0009056_0.694|GO:0009057_0.684|GO:0005975_0.681|GO:0005976_0.679|GO:0000272_0.670|GO:0010393_0.670|GO:0016052_0.670|GO:0045488_0.670|GO:0045490_0.670|GO:0016829_0.659|GO:0016835_0.654|GO:0016837_0.650|GO:0030570_0.650
|
IPR004898+21-223_74-227+|IPR011050+31-213+|IPR012334+29-250+
|
— |
PF03211+21-223+Pectate_lyase
|
— |
PTHR33407+74-227+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-252
|
1ee6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.907
|
26936.710
|
9.110
|
10.000
|
22.619
|
7.937
|
48.016
|
51.984
|
13.492
|
9.127
|
55.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
26761.575
|
21.422
|
2763.112
|
206.864
|
29.901
|
9.185
|
1.918
|
337.360
|
154126.969
|
223.001
|
66181.845
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.780
|
3.133
|
-3.629
|
-2.826
|
-1.688
|
-2.257
|
5.096
|
-7.314
|
9.309
|
-9.401
|
— | — | — |