Hg_chrom8_TN10mRNA_15110
Organism: Heterodera glycines Gene Locus: chr8:1176627-1180138 Feature type: polypeptideProtein Sequence
Length: 402
(Signal peptide: 1-37)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.521 | 1.678 | 0.995 | 0.343 | 1.327 | 0.638 | 0.385 | 1.368 | 1.935 | 1.378 | 1.357 | 1.463 | 2.211 | 0.622 | 0.914 | 0.853 | 0.652 | 0.754 | 1.148 | 0.878 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14260
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom8_TN10mRNA_15110
|
6-Not_Clustered
|
0.459
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — |
1-37
|
— |
0.549
|
— |
0.000
|
0.520
|
0.291
|
0.015
|
0.326
|
0.189
|
0.227
|
0.219
|
0.028
|
0.251
|
0.387
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004690
|
1.000
|
2.000
|
Hsc_gene_19187.t1;Hsc_gene_19187.t2
|
Hsc_gene_19187.t1;Hsc_gene_19187.t2
|
— | — |
XP_053695569.1 ovarian-specific serine/threonine-protein kinase Lok [Sabethes cyaneus]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.940|GO:0005575_0.900|GO:0110165_0.896|GO:0009987_0.885|GO:0005622_0.863|GO:0003674_0.856|GO:0016020_0.839|GO:0043226_0.813|GO:0043229_0.803|GO:0008152_0.797|GO:0065007_0.792|GO:0044238_0.779|GO:0050896_0.778|GO:0050789_0.777|GO:0043227_0.768|GO:0044237_0.768|GO:0003824_0.765|GO:0005488_0.761|GO:0009058_0.759|GO:0071840_0.759|GO:0050794_0.756|GO:0043231_0.754|GO:0051716_0.751|GO:0016043_0.749|GO:0043170_0.745|GO:0044249_0.741|GO:0005515_0.733|GO:0032502_0.727|GO:0048856_0.727|GO:0006950_0.724|GO:0009059_0.723|GO:0006139_0.716|GO:0006996_0.714|GO:0048518_0.714|GO:0010467_0.709|GO:0023052_0.709|GO:0048519_0.707|GO:0048522_0.707|GO:0007154_0.705|GO:0019222_0.705|GO:0033554_0.704|GO:0016740_0.703|GO:0048523_0.703|GO:0009628_0.702|GO:0007165_0.701|GO:0031323_0.700|GO:0034654_0.700|GO:0048869_0.699|GO:0080090_0.698|GO:0022414_0.697|GO:0030154_0.697|GO:0048468_0.697|GO:0060255_0.697|GO:0090304_0.697|GO:0141187_0.692|GO:0009889_0.691|GO:0031326_0.691|GO:0009893_0.690|GO:0048583_0.690|GO:0010468_0.689|GO:0010556_0.689|GO:0016070_0.689|GO:0019953_0.688|GO:0000280_0.687|GO:0031325_0.687|GO:0032774_0.687|GO:0048285_0.687|GO:0007049_0.686|GO:0022402_0.686|GO:0035556_0.686|GO:0010604_0.685|GO:0003006_0.684|GO:0006259_0.683|GO:0009891_0.683|GO:0008219_0.682|GO:0012501_0.682|GO:0031328_0.682|GO:0065009_0.682|GO:0140096_0.682|GO:0010557_0.681|GO:0051321_0.681|GO:0097159_0.681|GO:0140013_0.681|GO:1903046_0.681|GO:0000278_0.680|GO:0006915_0.680|GO:0019219_0.680|GO:0080134_0.680|GO:0140014_0.680|GO:1903047_0.680|GO:0006351_0.679|GO:0048609_0.679|GO:0051276_0.679|GO:0071214_0.679|GO:0104004_0.679|GO:0006974_0.678|GO:0009314_0.678|GO:0010564_0.678|GO:0051252_0.678|GO:0051726_0.678|GO:2001141_0.678|GO:0006355_0.677|GO:0007276_0.677|GO:0019899_0.677|GO:0045935_0.676|GO:0006281_0.675|GO:0006366_0.675|GO:0007281_0.675|GO:0007346_0.675|GO:0022412_0.675|GO:0061982_0.675|GO:0006357_0.674|GO:0044093_0.674|GO:0044770_0.674|GO:0051254_0.674|GO:1902680_0.674|GO:0051052_0.673|GO:0000075_0.670|GO:0000077_0.670|GO:0000976_0.670|GO:0001067_0.670|GO:0003676_0.670|GO:0003677_0.670|GO:0003690_0.670|GO:0003700_0.670|GO:0006282_0.670|GO:0007093_0.670|GO:0007292_0.670|GO:0008630_0.670|GO:0010165_0.670|GO:0010212_0.670|GO:0010332_0.670|GO:0010623_0.670|GO:0010948_0.670|GO:0030717_0.670|GO:0031570_0.670|GO:0035234_0.670|GO:0042770_0.670|GO:0043565_0.670|GO:0044773_0.670|GO:0044774_0.670|GO:0045786_0.670|GO:0045893_0.670|GO:0045930_0.670|GO:0045944_0.670|GO:0048477_0.670|GO:0051090_0.670|GO:0051091_0.670|GO:0061988_0.670|GO:0070192_0.670|GO:0071478_0.670|GO:0071479_0.670|GO:0071480_0.670|GO:0071481_0.670|GO:0072331_0.670|GO:0072332_0.670|GO:0080135_0.670|GO:0097190_0.670|GO:0097193_0.670|GO:0140110_0.670|GO:1901987_0.670|GO:1901988_0.670|GO:1990837_0.670|GO:0016772_0.669|GO:0098772_0.667|GO:0030234_0.664|GO:0016301_0.659|GO:0140677_0.659|GO:0016773_0.658|GO:0004672_0.656|GO:0008047_0.655|GO:0002020_0.650|GO:0008656_0.650|GO:0016504_0.650|GO:0016505_0.650|GO:0043028_0.650|GO:0050321_0.650|GO:0061134_0.650|GO:0005634_0.607
|
IPR000719+67-401_79-401_112-399+|IPR011009+112-398+
|
SM00220+79-401+
|
PF00069+112-399+Protein_kinase_domain
|
— |
PTHR44167+113-399+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-402
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.606
|
47289.630
|
7.530
|
5.500
|
29.602
|
15.174
|
49.254
|
50.746
|
16.169
|
13.433
|
39.552
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
357.875
|
1.682
|
9.357
|
30.483
|
266.773
|
9.057
|
4.063
|
15.459
|
0.000
|
1439.375
|
822.500
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.239
|
4.041
|
1.811
|
3.099
|
-4.867
|
— | — |
-1.783
|
-11.303
|
5.787
|
— | — | — |