Hg_chrom8_TN10mRNA_15115
Organism: Heterodera glycines Gene Locus: chr8:1214691-1218612 Feature type: polypeptideProtein Sequence
Length: 399
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.078 | 1.399 | 0.866 | 1.123 | 0.459 | 1.157 | 0.955 | 0.376 | 1.337 | 0.44 | 0.987 | 1.474 | 0.975 | 0.53 | 1.023 | 1.575 | 1.52 | 0.646 | 2.121 | 1.106 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14265
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
SKRRRKR
|
58-93
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.140
|
0.205
|
0.020
|
0.251
|
0.087
|
0.141
|
0.122
|
0.039
|
0.106
|
0.953
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011789
|
1.000
|
1.000
|
Hsc_gene_19193.t1
|
Hsc_gene_19193.t1
|
— |
P43508.1 Cathepsin B-like cysteine proteinase 4 [Caenorhabditis elegans]
|
KAI3413231.1 Papain cysteine protease [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0005575_0.752|GO:0110165_0.752|GO:0008150_0.743|GO:0003674_0.626|GO:0005622_0.570|GO:0016020_0.536|GO:0009987_0.524
|
IPR000169+163-174+|IPR000668+140-396_143-390_163-178_339-349_359-365+|IPR013128+87-381+|IPR025660+337-347+|IPR038765+126-392+
|
SM00645+140-396+
|
PF00112+143-390+Papain_family_cysteine_protease
|
— |
PTHR12411+87-381+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-96
|
1.000
|
97-399
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.919
|
43715.040
|
9.396
|
17.500
|
19.799
|
10.777
|
50.627
|
49.373
|
12.281
|
7.519
|
58.647
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
315.389
|
0.610
|
95.977
|
572.076
|
96.534
|
7.803
|
27.999
|
75.178
|
433.971
|
725.781
|
600.719
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.077
|
9.731
|
2.678
|
-2.600
|
-3.616
|
1.857
|
3.166
|
-1.282
|
— | — | — | — | — |
No JSON data available for plots.