Hg_chrom8_TN10mRNA_15122
Organism: Heterodera glycines Gene Locus: chr8:1248226-1254579 Feature type: polypeptideProtein Sequence
Length: 955
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.56 | 2.094 | 0.895 | 0.397 | 1.169 | 1.611 | 0.262 | 0.942 | 1.792 | 1.585 | 1.523 | 1.232 | 1.978 | 0.624 | 0.684 | 0.718 | 0.721 | 0.492 | 0.886 | 0.955 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14272
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|nucleus
|
nucleus
|
KKLAKISESERSIKLKQK
|
— | — | — | — |
1-25
|
0.744
|
1.000
|
0.000
|
0.000
|
0.606
|
0.197
|
0.006
|
0.600
|
0.140
|
0.181
|
0.129
|
0.163
|
0.120
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004693
|
1.000
|
2.000
|
Hsc_gene_19198.t1;Hsc_gene_21500.t1
|
Hsc_gene_19198.t1;Hsc_gene_21500.t1
|
— | — |
KAI3416513.1 hypothetical protein GPALN_006053 [Globodera pallida]
|
WP_257431961
|
0.370
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-955
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.698
|
112587.870
|
9.070
|
23.000
|
27.225
|
13.403
|
51.937
|
48.063
|
15.288
|
11.937
|
38.010
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
112.578
|
3.997
|
51.694
|
55.430
|
10.158
|
0.746
|
1.627
|
0.559
|
392.096
|
151.879
|
254.829
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.471
|
3.661
|
— |
-2.473
|
-3.748
|
— | — | — | — | — | — | — | — |