Hg_chrom8_TN10mRNA_15127
Organism: Heterodera glycines Gene Locus: chr8:1538995-1540382 Feature type: polypeptideProtein Sequence
Length: 191
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.304 | 1.583 | 0.762 | 0.903 | 1.309 | 1.879 | 0.249 | 1.309 | 1.163 | 1.061 | 1.349 | 1.848 | 1.6 | 0.705 | 0.641 | 1.421 | 0.944 | 0.952 | 1.208 | 0.77 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14277
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.641
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKIVIPRMAENLQQKIKDK
|
— | — |
8-48
|
0.868
|
— | — |
0.000
|
— | — |
0.802
|
0.246
|
0.033
|
0.269
|
0.098
|
0.103
|
0.051
|
0.028
|
0.091
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001646
|
3.000
|
1.000
|
Hsc_gene_8976.t1
|
Hsc_gene_8976.t1
|
— | — |
XP_013145332.1 PREDICTED: zinc finger BED domain-containing protein 4 [Papilio polytes]
|
No
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0008150_0.935|GO:0009987_0.892|GO:0065007_0.868|GO:0050789_0.865|GO:0050794_0.848|GO:0003674_0.801|GO:0005488_0.785|GO:0032501_0.771|GO:0032502_0.760|GO:0048856_0.760|GO:0007275_0.733|GO:0030154_0.724|GO:0048869_0.724|GO:0048513_0.694|GO:0097159_0.689|GO:0051301_0.684|GO:0009791_0.683|GO:0003676_0.681|GO:0001708_0.670|GO:0002119_0.670|GO:0002164_0.670|GO:0018996_0.670|GO:0040025_0.670|GO:0042303_0.670|GO:0045165_0.670|GO:0051302_0.670|GO:0072325_0.670|GO:0072327_0.670|GO:0003677_0.667|GO:0043565_0.665|GO:0003690_0.663|GO:1990837_0.663|GO:0000976_0.662|GO:0001067_0.662|GO:0000977_0.654
|
IPR003656+3-55_6-48+|IPR036236+6-55+|IPR052717+4-180+
|
SM00614+3-51+
|
PF02892+6-48+BED_zinc_finger
|
— |
PTHR46169+4-180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-191
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.705
|
22299.370
|
7.300
|
2.500
|
26.702
|
12.565
|
56.545
|
43.455
|
14.660
|
12.042
|
43.979
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
salmon
|
87.022
|
24.266
|
40.775
|
39.818
|
38.469
|
39.787
|
13.993
|
35.975
|
0.000
|
293.315
|
167.608
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
0.576
|
— | — | — |
-1.496
|
— |
-1.221
|
-6.675
|
6.172
|
— | — | — |
No JSON data available for plots.