Hg_chrom8_TN10mRNA_15135
Organism: Heterodera glycines Gene Locus: chr8:1980020-1980870 Feature type: polypeptideProtein Sequence
Length: 118
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.69 | 1.577 | 0.616 | 1.753 | 0.424 | 0.435 | 1.009 | 0.847 | 0.942 | 1.031 | 0.514 | 2.991 | 2.825 | 0.815 | 0.519 | 1.09 | 0.695 | 0.899 | 2.608 | 1.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14285
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.945
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.102
|
0.132
|
0.033
|
0.244
|
0.583
|
0.664
|
0.552
|
0.002
|
0.449
|
0.396
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011792
|
1.000
|
1.000
|
Hsc_gene_7862.t1
|
Hsc_gene_7862.t1
|
— |
Q20516.1 UPF0057 membrane protein F47B7.1 [Caenorhabditis elegans]
|
KAI6224738.1 UPF0057 membrane protein F47B7.1 [Aphelenchoides besseyi]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.624|GO:0110165_0.620|GO:0008150_0.612|GO:0016020_0.544
|
IPR000612+51-100+
|
— |
PF01679+51-100+Proteolipid_membrane_potential_modulator
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-118
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
13470.580
|
7.034
|
1.000
|
13.559
|
21.186
|
33.898
|
66.102
|
7.627
|
5.932
|
51.695
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
2760.678
|
6203.970
|
2695.427
|
1048.446
|
4260.120
|
2246.770
|
5952.708
|
1108.311
|
175.864
|
3127.664
|
1862.607
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.433
|
-2.702
|
-1.252
|
1.991
|
-0.909
|
1.415
|
-1.120
|
2.566
|
-4.285
|
— | — | — | — |
No JSON data available for plots.