Hg_chrom8_TN10mRNA_15137
Organism: Heterodera glycines Gene Locus: chr8:1994242-1995307 Feature type: polypeptideProtein Sequence
Length: 151
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.847 | 0.77 | 0.843 | 2.969 | 0.442 | 0.679 | 1.261 | 0.662 | 1.325 | 0.626 | 1.505 | 1.169 | 1.104 | 1.019 | 0.676 | 1.041 | 0.651 | 0.903 | 1.019 | 1.558 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14287
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_7832;Hsc_gene_7940;Hsc_gene_7870
|
— |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
chloroplast
|
RKGYKGNVPVEIGVPSKKR
|
— | — |
13-54
|
0.942
|
1-26
|
0.998
|
1.000
|
0.000
|
0.000
|
0.068
|
0.102
|
0.011
|
0.133
|
0.392
|
0.258
|
0.199
|
0.024
|
0.698
|
0.566
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011794
|
1.000
|
1.000
|
Hsc_gene_7940.t1
|
Hsc_gene_7832.t1;Hsc_gene_7880.t1;Hsc_gene_7940.t1
|
— | — |
KAI3412179.1 hypothetical protein GPALN_002221 [Globodera pallida];KAI3412182.1 hypothetical protein GPALN_002224 [Globodera pallida]
|
MDO4567000
|
0.490
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-151
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
16435.110
|
8.661
|
10.000
|
21.854
|
11.921
|
39.073
|
60.927
|
14.570
|
7.285
|
56.954
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1361.791
|
0.149
|
19.128
|
2592.374
|
1123.431
|
56.845
|
48.445
|
27.193
|
394.932
|
4211.299
|
2575.713
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.739
|
13.911
|
7.187
|
-1.238
|
-4.291
|
— |
-1.174
|
0.977
|
— | — | — | — | — |