Hg_chrom8_TN10mRNA_15138
Organism: Heterodera glycines Gene Locus: chr8:1995554-2000337 Feature type: polypeptideProtein Sequence
Length: 258
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.946 | 0.721 | 0.916 | 1.069 | 1.292 | 1.69 | 0.784 | 1.357 | 0.603 | 1.048 | 0.94 | 1.14 | 1.4 | 0.894 | 1.661 | 0.388 | 1.398 | 0.646 | 1.491 | 0.912 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14288
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
EAKKGKKGCRKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.584
|
0.173
|
0.011
|
0.676
|
0.155
|
0.087
|
0.285
|
0.012
|
0.060
|
0.171
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011795
|
1.000
|
1.000
|
Hsc_gene_7878.t1
|
Hsc_gene_7873.t1;Hsc_gene_7878.t1
|
— | — |
KAK6051986.1 acetyltransferase, GNAT family [Cooperia oncophora]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0010485|GO:0016747|GO:0043998
|
GO:0008150_0.935|GO:0003674_0.669|GO:0005575_0.629|GO:0110165_0.624|GO:0008152_0.567|GO:0003824_0.551|GO:0044238_0.549|GO:0009987_0.548|GO:0005622_0.531
|
IPR000182+59-213_93-187+|IPR016181+61-210+|IPR039949+36-216+
|
— |
PF00583+93-187+Acetyltransferase_(GNAT)_family
|
— |
PTHR20531+36-216+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
201-258
|
1.000
|
1-200
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
29716.640
|
8.295
|
7.500
|
29.845
|
12.791
|
50.775
|
49.225
|
17.054
|
12.791
|
46.124
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1031.747
|
234.328
|
284.824
|
260.971
|
337.372
|
340.890
|
505.215
|
352.010
|
2995.743
|
1398.731
|
2083.165
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.339
|
— |
0.579
|
— |
0.667
|
— | — | — | — | — |
No JSON data available for plots.