Hg_chrom8_TN10mRNA_15139
Organism: Heterodera glycines Gene Locus: chr8:2000543-2004291 Feature type: polypeptideProtein Sequence
Length: 263
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.663 | 0.619 | 0.899 | 0.918 | 1.267 | 1.267 | 0.453 | 2.091 | 0.929 | 1.49 | 0.576 | 1.342 | 1.267 | 0.877 | 1.862 | 1.412 | 0.561 | 0.922 | 1.755 | 0.671 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14289
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
PHMKRMR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.124
|
0.974
|
0.019
|
0.318
|
0.039
|
0.029
|
0.089
|
0.011
|
0.035
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004695
|
2.000
|
1.000
|
Hsc_gene_7877.t1
|
Hsc_gene_7877.t1
|
— | — |
NP_001022442.1 Alpha-ketoglutarate-dependent dioxygenase AlkB-like domain-containing protein [Caenorhabditis elegans];CAE18012.1 Alpha-ketoglutarate-dependent dioxygenase AlkB-like domain-containing protein [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006974
|
GO:0008150_0.940|GO:0005575_0.900|GO:0110165_0.891|GO:0009987_0.888|GO:0065007_0.866|GO:0005622_0.836|GO:0016020_0.807|GO:0005737_0.779|GO:0043226_0.770|GO:0043229_0.751|GO:0043227_0.736|GO:0051179_0.723|GO:0043231_0.719|GO:0031974_0.593|GO:0043233_0.589|GO:0070013_0.588|GO:0005739_0.559|GO:0005759_0.545|GO:0050789_0.512
|
IPR032870+48-252+|IPR037151+62-258+
|
— | — | — |
PTHR21052+48-252+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-263
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
30559.860
|
7.714
|
6.500
|
29.658
|
13.308
|
50.570
|
49.430
|
17.110
|
12.548
|
43.726
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
magenta
|
207.791
|
169.503
|
196.378
|
228.947
|
328.133
|
230.010
|
527.138
|
193.877
|
91.757
|
137.524
|
117.910
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.297
|
0.330
|
0.487
|
-0.498
|
1.207
|
-0.352
|
1.586
|
— | — | — | — | — |
No JSON data available for plots.