Hg_chrom8_TN10mRNA_15141
Organism: Heterodera glycines Gene Locus: chr8:2038002-2039769 Feature type: polypeptideProtein Sequence
Length: 305
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.106 | 0.61 | 0.715 | 1.018 | 0.874 | 1.093 | 2.615 | 1.148 | 0.583 | 0.487 | 0.894 | 1.736 | 0.546 | 1.828 | 1.271 | 0.328 | 0.591 | 0.845 | 0.757 | 0.579 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14291
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RKRR,RIGRKGFRG
|
— | — | — | — | — | — |
0.079
|
— | — |
0.060
|
0.085
|
0.006
|
0.111
|
0.480
|
0.214
|
0.339
|
0.001
|
0.665
|
0.343
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004696
|
2.000
|
1.000
|
Hsc_gene_7876.t1
|
Hsc_gene_7876.t1;Hsc_gene_7930.t1
|
— |
Q23628.1 Cuticle collagen lon-3 [Caenorhabditis elegans]
|
KAI1721742.1 cuticle collagen lon-3 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.922|GO:0032501_0.790|GO:0032502_0.781|GO:0048856_0.781|GO:0005575_0.744|GO:0110165_0.740|GO:0003674_0.669|GO:0030312_0.645|GO:0071944_0.645|GO:0007275_0.504
|
IPR002486+5-57_9-57+|IPR008160+157-211+|IPR050632+10-291+
|
SM01088+5-57+
|
PF01391+157-211+Collagen_triple_helix_repeat_(20_copies)|PF01484+9-57+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+10-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
107-305
|
1.000
|
1-106
|
9han_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.974
|
31065.010
|
9.089
|
12.500
|
23.607
|
7.213
|
36.393
|
63.607
|
14.426
|
9.180
|
61.967
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
white
|
96.889
|
14.118
|
12.714
|
3.508
|
72.104
|
695.756
|
13.578
|
297.280
|
8.053
|
1.952
|
4.567
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-2.146
|
-1.747
|
4.330
|
3.286
|
-5.671
|
-1.338
|
-4.309
|
— | — | — | — | — |
No JSON data available for plots.