Hg_chrom8_TN10mRNA_15142
Organism: Heterodera glycines Gene Locus: chr8:2045216-2045919 Feature type: polypeptideProtein Sequence
Length: 183
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.525 | 0.762 | 0.795 | 0.565 | 0.638 | 0.56 | 0.781 | 0.546 | 1.093 | 0.886 | 1.242 | 3.536 | 1.518 | 0.736 | 1.896 | 0.39 | 1.075 | 1.076 | 1.261 | 0.482 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14292
|
— | — |
0.889
|
— |
2.000
|
1.000
|
— |
1.000
|
2.000
|
— |
2.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKWK,RKRK
|
96-120
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.620
|
0.465
|
0.205
|
0.305
|
0.151
|
0.122
|
0.132
|
0.060
|
0.328
|
0.504
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004697
|
1.000
|
2.000
|
Hsc_gene_10864.t1;Hsc_gene_10866.t1
|
— | — | — |
MBP1641993.1 endopeptidase La [Acidobacteriota bacterium]
|
WP_171002644
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004252|GO:0006508
|
— |
IPR008269+87-182+|IPR014721+9-183+|IPR020568+30-181+
|
— |
PF05362+87-182+Lon_protease_(S16)_C-terminal_proteolytic_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-183
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
20548.280
|
11.063
|
18.000
|
26.776
|
9.836
|
41.530
|
58.470
|
18.579
|
8.197
|
49.180
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
1.556
|
0.467
|
1.220
|
2.688
|
5.662
|
0.741
|
0.815
|
0.548
|
0.000
|
2.257
|
1.290
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.400
|
— | — |
-2.909
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.