Hg_chrom8_TN10mRNA_15143
Organism: Heterodera glycines Gene Locus: chr8:2046818-2050960 Feature type: polypeptideProtein Sequence
Length: 267
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.653 | 0.61 | 0.885 | 1.033 | 1.124 | 1.248 | 0.535 | 2.247 | 0.999 | 1.569 | 0.567 | 1.322 | 1.457 | 0.792 | 1.834 | 1.498 | 0.553 | 0.738 | 1.441 | 0.661 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14293
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
PHMKRMR
|
6-27
|
0.983
|
— | — | — | — |
0.000
|
— | — |
0.119
|
0.963
|
0.028
|
0.287
|
0.040
|
0.030
|
0.096
|
0.011
|
0.045
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004695
|
2.000
|
1.000
|
Hsc_gene_7877.t1
|
Hsc_gene_7877.t1
|
— | — |
XP_002631908.1 Protein CBG07885 [Caenorhabditis briggsae];CAP27824.1 Protein CBG07885 [Caenorhabditis briggsae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006974
|
GO:0008150_0.939|GO:0005575_0.899|GO:0110165_0.888|GO:0009987_0.882|GO:0065007_0.865|GO:0005622_0.833|GO:0016020_0.805|GO:0005737_0.769|GO:0043226_0.768|GO:0043229_0.756|GO:0043227_0.743|GO:0043231_0.723|GO:0051179_0.718|GO:0031974_0.594|GO:0043233_0.590|GO:0070013_0.589|GO:0005739_0.558|GO:0005759_0.545|GO:0050789_0.507
|
IPR032870+36-256+|IPR037151+66-262+
|
— | — | — |
PTHR21052+36-256+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-267
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
30883.270
|
8.128
|
9.000
|
28.839
|
13.858
|
50.187
|
49.813
|
17.228
|
11.610
|
43.446
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
magenta
|
202.800
|
72.915
|
83.041
|
106.861
|
133.827
|
104.113
|
170.402
|
97.571
|
135.063
|
497.680
|
342.273
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.414
|
0.472
|
0.293
|
-0.348
|
0.722
|
— |
0.949
|
— | — | — | — | — |
No JSON data available for plots.