Hg_chrom8_TN10mRNA_15147
Organism: Heterodera glycines Gene Locus: chr8:2105478-2110039 Feature type: polypeptideProtein Sequence
Length: 306
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.836 | 1.52 | 0.119 | 0.789 | 0.327 | 0.922 | 0.506 | 0.98 | 1.961 | 2.12 | 0.693 | 1.73 | 2.179 | 0.566 | 0.467 | 1.447 | 0.804 | 0.891 | 1.257 | 1.153 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14297
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
20-43
|
0.767
|
— | — | — | — |
0.000
|
— | — |
0.140
|
0.114
|
0.017
|
0.068
|
0.349
|
0.139
|
0.238
|
0.046
|
0.813
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002469
|
1.000
|
3.000
|
Hsc_gene_7867.t1;Hsc_gene_7881.t1;Hsc_gene_7942.t1
|
Hsc_gene_7942.t1;Hsc_gene_9371.t1
|
— | — |
KAI3410984.1 Serpentine type 7TM GPCR chemoreceptor Srsx [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+12-272+|IPR017452+18-258+|IPR019424+13-271+|IPR047130+8-288+
|
SM01381+12-272+
|
PF10320+13-271+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— |
PTHR23360+8-288+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-306
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.835
|
34415.920
|
9.805
|
16.000
|
11.438
|
15.359
|
36.601
|
63.399
|
8.824
|
2.614
|
44.771
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
129.538
|
3.414
|
7.314
|
1.967
|
1.682
|
0.507
|
5.671
|
0.827
|
4.146
|
555.600
|
319.263
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-1.786
|
— | — |
3.500
|
— |
2.922
|
— | — | — | — | — |
No JSON data available for plots.