Hg_chrom8_TN10mRNA_15148
Organism: Heterodera glycines Gene Locus: chr8:2117104-2119117 Feature type: polypeptideProtein Sequence
Length: 334
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.462 | 0.766 | 0.708 | 1.032 | 0.898 | 0.998 | 1.925 | 0.898 | 0.931 | 0.566 | 0.862 | 1.761 | 0.665 | 1.67 | 1.466 | 0.299 | 0.638 | 0.998 | 0.691 | 0.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14298
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.748
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRIGRKGFRGVPGEHGPEGPLGEPGKPGPVGPKGVPVPRALPASRAFPAAKARKEPKAQMARRAKTR
|
— | — | — | — | — | — |
0.058
|
— | — |
0.068
|
0.073
|
0.013
|
0.131
|
0.380
|
0.216
|
0.283
|
0.001
|
0.677
|
0.430
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004696
|
2.000
|
1.000
|
Hsc_gene_7876.t1
|
Hsc_gene_7876.t1;Hsc_gene_7930.t1
|
— |
Q23628.1 Cuticle collagen lon-3 [Caenorhabditis elegans]
|
KAI1721742.1 cuticle collagen lon-3 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.930|GO:0032501_0.787|GO:0032502_0.778|GO:0048856_0.778|GO:0005575_0.747|GO:0110165_0.736|GO:0003674_0.651|GO:0071944_0.609|GO:0030312_0.549
|
IPR002486+5-57_9-57+|IPR008160+157-211+|IPR050632+11-255+
|
SM01088+5-57+
|
PF01391+157-211+Collagen_triple_helix_repeat_(20_copies)|PF01484+9-57+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+11-255+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
107-334
|
1.000
|
1-106
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.958
|
34653.600
|
9.535
|
15.000
|
23.952
|
6.287
|
37.126
|
62.874
|
14.671
|
9.281
|
60.180
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
110.077
|
20.319
|
11.590
|
3.509
|
84.835
|
784.943
|
4.859
|
207.954
|
12.694
|
52.812
|
35.619
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.038
|
-2.672
|
-1.617
|
4.566
|
3.225
|
-7.327
|
-2.027
|
-5.276
|
— | — | — | — | — |
No JSON data available for plots.