Hg_chrom8_TN10mRNA_15150
Organism: Heterodera glycines Gene Locus: chr8:2132916-2134372 Feature type: polypeptideProtein Sequence
Length: 180
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.68 | 1.292 | 0.505 | 0.766 | 1.296 | 0.57 | 1.19 | 0.556 | 0.741 | 1.276 | 1.094 | 2.288 | 0.463 | 0.962 | 1.02 | 1.111 | 0.911 | 0.673 | 0.427 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14300
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.686
|
0.124
|
0.025
|
0.430
|
0.119
|
0.041
|
0.167
|
0.080
|
0.084
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004699
|
1.000
|
2.000
|
Hsc_gene_7932.t1;Hsc_gene_7932.t2
|
Hsc_gene_7932.t1;Hsc_gene_7932.t2
|
— |
G5EFF1.1 RNA-binding protein asd-2 [Caenorhabditis elegans]
|
KAI1717358.1 homodimerization region of STAR domain protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723
|
GO:0008150_0.854|GO:0009987_0.772|GO:0005575_0.756|GO:0110165_0.749|GO:0003674_0.696|GO:0005488_0.679|GO:0005622_0.667|GO:0016020_0.638|GO:0043226_0.634|GO:0043229_0.619|GO:0065007_0.609|GO:0050789_0.596|GO:0097159_0.572|GO:0003676_0.563|GO:0008152_0.562|GO:0009058_0.554|GO:0044238_0.551|GO:0043227_0.542|GO:0050794_0.540|GO:0044237_0.538|GO:0009059_0.531|GO:0010467_0.531|GO:0043170_0.531|GO:0043231_0.531|GO:0044249_0.531|GO:0006139_0.525|GO:0003723_0.510|GO:0016070_0.509|GO:0090304_0.509
|
IPR036612+1-104_2-98+|IPR045071+1-112+
|
— | — | — |
PTHR11208+1-112+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56
|
1.000
|
57-180
|
4jvh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.918
|
18734.420
|
8.517
|
4.000
|
23.889
|
3.333
|
45.000
|
55.000
|
13.333
|
10.556
|
57.778
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
192.501
|
458.966
|
305.500
|
245.331
|
268.824
|
281.463
|
187.225
|
272.436
|
29.305
|
62.809
|
48.450
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.816
|
-1.041
|
-0.208
|
— | — |
-0.578
|
— |
-0.399
|
— | — | — | — | — |
No JSON data available for plots.