Hg_chrom8_TN10mRNA_15154
Organism: Heterodera glycines Gene Locus: chr8:2316951-2323193 Feature type: polypeptideProtein Sequence
Length: 380
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.796 | 1.591 | 0.718 | 1.452 | 0.57 | 0.877 | 0.971 | 1.711 | 2.105 | 0.925 | 1.077 | 0.929 | 1.535 | 0.557 | 0.698 | 1.128 | 0.82 | 0.837 | 0.81 | 1.006 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14304
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.395
|
0.212
|
0.038
|
0.570
|
0.291
|
0.122
|
0.079
|
0.008
|
0.235
|
0.245
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000397
|
4.000
|
4.000
|
Hsc_gene_11857.t1;Hsc_gene_11857.t2;Hsc_gene_20833.t1;Hsc_gene_346.t1
|
Hsc_gene_11857.t2;Hsc_gene_20833.t1
|
— |
Q21770.1 Argonaute protein wago-1 [Caenorhabditis elegans]
|
KAI1717393.1 piwi domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
GO:0005575_0.628|GO:0110165_0.625|GO:0008150_0.598|GO:0003674_0.545|GO:0009987_0.519|GO:0005622_0.516
|
IPR003165+91-149+|IPR012337+32-151+|IPR013320+151-285+|IPR043136+203-306+
|
— |
PF02171+91-149+Piwi_domain
|
— |
PTHR22891+2-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-380
|
8bv0_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.913
|
42039.390
|
8.758
|
18.500
|
21.316
|
13.421
|
44.474
|
55.526
|
13.947
|
7.368
|
51.316
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
156.546
|
1.846
|
10.138
|
4.713
|
4.695
|
5.785
|
6.691
|
4.136
|
1.382
|
669.602
|
383.222
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.228
|
— |
-0.998
|
— | — | — | — | — |
-9.141
|
— |
-6.629
|
— | — |
No JSON data available for plots.